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JGI User Executive Committee Expands
… of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). They are: Ivan Baxter of the … environments. He’s been involved in several plant genome projects through the Community Science Program. As a UEC … families to understand enzyme activity. As another early career researcher on the UEC, she is interested in creating …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As … University in Fort Collins. He’s part of a JGI-supported project studying the world’s rivers and their microbial … its health.  He sat down with me to talk about his project, and riffed a bit on what it means in a more global …
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Protocols
… by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols can be found here . DNA … Tips for High Molecular Weight DNA extraction: … RNA Extraction Protocols: …
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DOE JGI Interns Share Their Summer Experiences
… the field, work at the lab bench, and also do some computational analyses at their desks. As part of the DOE JGI’s efforts to promote diversity and inclusion in the sciences, among the interns were two undergraduate … worked with Zhong Wang’s group on an aspect of the same project assigned to Sharon and Cristhian; and, Lizhen Shi , …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… team  announced in  Nature Microbiology an important addition to the synthetic biologist’s toolkit: a technique for  c … the amount of DNA that can be inserted at a time. In a  project detailed in  ACS Synthetic Biology , Yoshikuni and … JGI collaborator Jeffery Dangl at the University of North Carolina at Chapel Hill, using CRAGE-Duet to engineer  …
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JGI@25: Roots of a Mutualist Relationship
… In honor of the JGI's 25th anniversary in 2022, we have … In March 2008, the genome sequence of the forest fungus Laccaria bicolor was published in the journal Nature . The … many sequenced through the JGI 1000 Fungal Genomes Project.       Francis Martin on the main impact of …
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JGI Earth Month: The Unusual Metabolism That Helps Plants Withstand Drought
… In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As … i.e. in January. She talked about her  Community Science Project proposal with JGI, in which she’s studying a special … are open, it’s the same pore in the leaf through which carbon dioxide enters the leaf for photosynthesis.  ALISON:  …
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Improving the Cacao Genome and Phytozome
… brands can’t exist without cocoa According to the  International Cocoa Organization (ICCO), global cocoa bean production in 2017-2018  was … Mars, Inc.-led consortium through the Cacao Genome Database project. The genome sequence was assembled by the plant team …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… proposals have been accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent … Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … initiatives in bioenergy crop improvement and terrestrial carbon transformations.” The JGI’s large-scale call included …
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Finding the Fermenters
… prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in environments with … (Berkeley Lab), and the DOE Systems Biology Knowledgebase (KBase). They also built an interactive browser that … than 400 cultured rumen prokaryotes from the  Hungate1000 project . They also used the tool to predict possible …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… For the last 15 years, Ray Turner has been one constant for the Joint Genome Institute. On July 1, … Ray’s wife Deb, delivered a mask for Ray to wear and a red carnation lei flown in from Maui, care of the Admin Group’s … at a high level as JGI transitioned from the Human Genome Project to gaining momentum as a national user facility. He …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… The  National Ecological Observatory Network (NEON) is a network of field research sites designed to collect … assignable assets program. Q: For a NEON Assignable Assets project, does the data produced become public as well? A:  … of Science User Facility  located at Lawrence Berkeley National Laboratory, is committed to advancing genomics in …
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