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Self-Buffering system for Cost-Effective production of lactic acid from glucose and xylose using Acid-Tolerant Issatchenkia orientalis
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The Dynamic Influence of Subsurface Geological Processes on the Assembly and Diversification of Thermophilic Microbial Communities in Continental Hydrothermal Systems
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Bright luminescence of Vibrio fischeri aconitase mutants reveals a connection between citrate and the Gac/Csr regulatory system
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Learning to Look
… a similar type of search in microbial and metagenomic databases. In this case, the machine “learned” to identify a … co-infecting phages and with the host’s CRISPR-Cas immunity systems. Countering Co-Infections, Ensuring Host Survival … of phage-bacterial coevolution and are also useful tools in CRISPR-Cas applications, but we are limited in our …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
For the first time in several years, the DOE Joint Genome Institute hosted several UC Merced students this past … with excitement and determination as they came onsite. From data carpentry to science communications, their schedules … and mentor Bryce Foster, Benchmarking Bioinformatics Tools for Sequence Similarity Searching Morgan Lavenstein …
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High quality draft genome sequence and analysis of Pontibacter roseus type strain SRC-1T (DSM 17521T) isolated from muddy waters of a drainage system in Chandigarh, India
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Ben Bowen
… and chemistry for advanced analysis, modeling, and data integration. Dr. Bowen’s expertise in spectral … Northen, T., & Bowen, B. (2015). Analysis of metabolomics datasets with high-performance computing and metabolite … important ions and positions in mass spectrometry imaging data using CUR matrix decompositions. Analytical chemistry, …
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Training the Next Generation of Talent
… as a first-year graduate student in the Quantitative Systems Biology (QSB) Group under the School of Natural … genome research and apply experimental and computation tools to solve research problems. In Visel’s group, Olmstead … says. “Many academic labs don’t know how to analyze RNA-Seq data very well, sending it out to companies. I’ll take that …
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2023 Progress Report
… we provide advanced genomic capabilities, large-scale data, and professional expertise to support the global … in studies of complex biological and environmental systems. We optimize our service to the community through …
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Game On: High School Students Drive Everglades Metagenomics Study
… through over 55 billion genes and 16 trillion DNA bases of data, to figure out what to study and compare for the … tests for raw data and how to use some bioinformatics tools for analysis to help them focus on what to pull out … sequencing and computational analysis that enable systems-based scientific approaches to these challenges.  …
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Analysis of Porphyra Membrane Transporters Demonstrates Gene Transfer among Photosynthetic Eukaryotes and Numerous Sodium-Coupled Transport Systems      
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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