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The Megadata of Lake Mendota - Part 2: Souped Up Computing
… a look at the supercomputing that stitches together large datasets with the assembler program MetaHipMer2. Oak Ridge … — Summit and Frontier — that process terabytes of data with MetaHipMer2. And the National Energy Research …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… of a virus relative to its host (inferred through sequence data) can suggest different predatory behaviors. A high … Winner” — “Piggyback the Winner.” In the microbial mat, the data suggest viruses are indeed piggybacking their hosts. … Genome Institute, a DOE Office of Science User Facility, is supported under Contract No. DE-AC02-05CH11231. JRS is …
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Gut Fungi: Unexpected Source of Novel Chemicals
… natural products, O’Malley and her team plan to use genetic tools to boost production and isolate the compounds. … unexpected chemical potential. … This research project was supported by a grant from Santa Barbara Cottage Hospital and … (JGI) and DE-AC05-76RL01830 (EMSL). CLS is also supported by a National Science Foundation Graduate Research …
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Annual Genomics of Energy & Environment Meeting
… infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new technology developments – that the …
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JGI-UC Merced Interns Share Their 2021 Experiences
P. hallii Mutant Library … Evaluation of Binning Tools for Microbial Eukaryotes in Metagenomes … Functional … Transcriptomes of Rice and Arabidopsis Roots … Making Big Data Metagenomic Clustering Scalable … Cataloging Lineage …
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JGI at the AGU Fall Meeting
Lab (short talk): “How do we make interdisciplinary sample data more FAIR?” December 16 7:55am, Convention Center Rm … “EMSL’s 1000 Soils Project: core collection strategy and data types available” December 17  6:40am Convention Center … Weisenhorn, KBase at Argonne (lightning talk): “Applying Data Standards and Reproducible Workflows To Advance Earth …
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SIPs with Standards
… more researchers. Ultimately, the goal is to generate SIP data that can be useful to multiple teams and analyses. This …
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Year in Review: JGI’s 2018 Progress Report Available Now
… by the JGI (isolates here , here and here ), and the data has been used to better understand arsenic mobility and …
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JGI Contributes Eight to 2023 Highly Cited Researchers list
Nikos Kyrpides, Natalia Ivanova and Simon Roux, along with data from a consortium that included Susannah Tringe and …
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High-Quality Draft Nuclear and Mitochondrial Genome Sequence of Fusarium oxysporum f. sp. albedinis strain 9, the Causal Agent of Bayoud Disease on Date Palm.
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Doubling Down on Known Protein Families
… the collective power of more than 26,000 microbiome datasets, all accessible through the publicly available  … Integrated Microbial Genomes & Microbiomes (IMG/M) database, they successfully crafted the Novel Metagenome … National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy generation …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds light on the … Council of Canada (NSERC) Discovery program grants to C.L. Support from the Canada First Research Excellence Fund to … No. DE-AC02-05CH11231. … P. psychrophila on PhycoCosm … Datasets …
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