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Model Fern Reveals Insight into DNA Thievery in Ferns
… plant evolution. Recent findings in Ceratopteris richardii show a long history of dynamic evolution and rapid changes in … hoarding and those long genes. And gene family analysis showed that genes directing development of reproductive … to S.C.); the Key R&D Program of Zhejiang Province (grant 2021C02009 to S.X.) and Zhejiang Provincial Natural Science …
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Triggering Morel Fruiting
… a DOE Office of Science User Facility,  reported on just how morel fruiting is triggered when nutrients are acquired … revealed a striking capability of morel mycelium to acquire carbon from lignocellulosic-abundant matters such as plant … the fruiting of soil saprotrophic mushrooms. To date, how the nutritional acquisition of the morel mycelium is …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… mode’, where they do very little.  SIP experiments can show which species actively munch on a specific chemical … a modified version of a specific chemical, where ordinary Carbon-12 atoms are swapped for the heavier, non-radioactive … this to untangle which microbes ate the compound and how much they ate.  These analyses provide granular insight …
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Phytozome: Tutorial Workshop from 2022 CROPS Conference @HudsonAlpha
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Busting the Unbreakable Lignin
… New evidence shows anaerobic fungi can degrade the hardiest of plant … to do so is a resource-intensive process. Now, a new study shows how anaerobic fungi — the kind living in the stomachs … anaerobic fungi (Neocallimastix californiae) on sorghum, switchgrass and poplar, then monitored changes to the …
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Matthew Kellom
… are of particular interest. Matt also supports various CSP and FICUS user projects for the Metagenome Program. …
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Dispatches From JGI Interns
… JGI mentors. In this episode, hear two interns from the 2021 cohort describe their deep dives into genomics, …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… Meta-omics datasets show that CRISPR-Cas systems determine mutualism or … host — often, a fellow archaeal microbe. Understanding how these hosts and hitchhikers coexist is key for … crust, there is a vast ecosystem connected to the global carbon cycle. Archaea are key players in this deep …
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Soil virus offers insight into maintaining microorganisms
… portal, researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, … study in  Nature Communications , a chitosanase, is tied to carbon cycling and plays an important role in how carbon is processed and cycled in soils. Ultimately, …
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Engagement Webinar: Utilizing long-read sequencing for metagenomics and DNA modification detection
… This webinar focused on how the JGI employs single-molecule, long-read DNA sequences … Q&A from the Webinar: Input & sequencing Q(uestion): How much DNA is needed for “regular” vs the ultra-low input … deeply are metagenomes sequenced? A:  For the next call ( CSP New Investigator ), up to 4 long-reads (PacBio) …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… machine learning tools. “This was very exciting to see how Rhondene not only embraced the research question and … perspective about what it means to be a scientist. “To see how team science is done at an advanced and large research … a virtual four-day data carpentry workshop for the incoming 2021 JGI-UC Merced interns to help familiarize incoming …
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