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… ranging from wetlands to tree islands to cattails. In 2018, the US Department of Energy (DOE) Joint Genome … cycle. Their data report, which provides the only known reference microbiome data sets for the Loxahatchee Refuge,  … email inquiries, sent through JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) system, reached  Emiley …

… Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant … Paez-Espino  discussed an early version of the paper at the 2018 Viral EcoGenomics & Applications (VEGA) Symposium. The …

… it can also serve as a stepping stone to studying many genomes simultaneously through multiDAP, which allows … proposal through the JGI’s Community Science Program (CSP) focuses on a fungal comparative ENCODE project known as … what TFs and regulatory networks are conserved across fungi.” Using multiDAP-seq, Nagy’s team is comparing five …

… In   April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on …

… consequences of microbe-microbe interactions. Using metagenomes recovered directly from environmental samples and … in East Antarctica and enriched for native microbes. Metagenomes from enrichment cultures were sequenced and … dhesion and  r estriction  e ndonuclease domains—of up to 8,500 amino acids in length. These were actively synthesized …

… 35 major evolutionary plant lineages in the  Open Green Genomes Initiative , a project supported by the U.S. … . The comparative framework provided by these high quality reference genome sequences could help researchers better … encompass a plant’s genetic diversity beyond a single reference genome, which is key to understanding its full …

… of the latest SCGSR award is Mo Kaze, part of the 2018 cohort of the JGI-UC Merced Genomics Internship … microbiomes. Tringe was also Kaze’s mentor during her 2018 internship, in which she explored anthropogenic impacts …

… website. Since May 2019, v12 has not had any additional genomes added to it, nor had any feature updates. Phytozome  v13, which now hosts upwards of 250 plant genomes and has been under active development for over 5 …

… workflows that allow researchers to easily analyze viral genomes. This includes (i) classifying viruses into groups … the quality and completeness of metagenome-assembled viral genomes ( Nature Biotechnology , 2021), geNomad , a tool for … robust methodologies for analyzing and understanding viral genomes and their interactions with microbial hosts. The …