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A Natural Mechanism Can Turbocharge Viral Evolution
The Science The first step in the deadly dance between a virus and microbial cell is an embrace. For a virus with a … in single microbial and viral genomes, as well as genomes sampled all at once from the same environment, called … acknowledge support from the EMERGE Institute (NSF #2022070). Sequencing of the Stordalen Mire samples used …
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Olpidium, The Key to the Origin of Terrestrial Fungi
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … the effort that led to the work published in Scientific Reports . Before 2006, Olpidium was one of the many obscure … resolve the latter question, despite of their well-designed sampling and analysis of their data at the time. Following …
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From Textbook to Real World Applications
La Salle High School expressed an interest in learning more about the principles of synthetic biology, Robert Evans and Jan-Fang Cheng in the Functional Genomics group took it upon themselves to mentor them. …
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Making a Lichen Together
… time, a team analyzes the transcriptomes of a lichen fungus and alga to understand their partnership more clearly. … microbe, tucked in the fungus’ tissue. If you’re a Marvel Comics fan, you might liken the symbiotic relationship … Their partnership is widespread and cosmopolitan: more than 20,000 ascomycete species and hundreds of microalgae are …
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Waiting to Respire
Melainabacteria and Sericytochromatia, members of the same clade as Cyanobacteria, applied strategies other than photosynthesis to gain and harness energy. As reported January 28, 2019 in Nature Communications , two … popularizer and communicator (and at one time, the spouse of Lynn Margulis). The information was then used to …
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Dealing with Drought: Uncovering Sorghum’s Secrets
Over 40 percent of the cereal crop’s genes respond to drought … (UC), Berkeley, UC Agriculture and Natural Resources (ANR), US Department of Agriculture P­­lant Gene Expression Center, … root, leaf and rhizosphere (soil surrounding the root) samples from the plants at the same time each week over the …
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How to Target a Microbial Needle within a Community Haystack
… specific uncultivated microbes from complex environmental samples. The Science A team led by researchers at the Max … targeted genomic approach would allow researchers to focus on specific microbes within metagenome samples and … traditional shotgun metagenomics approach to learning more about environmental samples starts with researchers first …
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Chomping Toward Better Plastic Recycling
We know all kinds of things about plastic – except, how to break it down for recycling. … a look at how these critters process plastic, to improve plastic recycling by following their lead.            …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating … the Sierra Nevada mountain range since 2014 to learn more about the microbial responses and feedbacks to warming …
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, bacteria, archaea, fungi, viruses — to support scientists around the world. Most of those … send their samples in from afar, without ever hearing much about the sequencing lab. So today, Chris Daum walks through …
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Sequence to Function: Applications and Analysis for the Future (SFA²F)
… established and emerging scientists from academia, industry, and government organizations for three days of scientific … center talk and a tech talk. Stop by the JGI booth to learn about our user programs and how we can help advance your …
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JGIota: Looking Back at Sequencing for Soybeans
Glycine max. With a full genome sequence, researchers have been able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear more about that work from researchers Gary Stacey (University of …
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