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Mike Sneddon
… a laboratory information management (LIMS) system. He previously led the NGS Software team and metagenomic data platform … library and natural product discovery platform. WO2021163637A1 , PCT application PCT/US2021/018050 (published 2021). Arkin, AP, et al. KBase: The …
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Changes to virus taxonomy, the international code of virus classification and nomenclature, and the ICTV statutes ratified by the International Committee on Taxonomy of Viruses (2025)
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Building Sphagnum Genomic Resources
… resources to build up Sphagnum as a plant model system focused on carbon cycling studies, rather than for food or fuel … decomposed matter, and researchers estimate that they hold about 25 percent of the world’s soil carbon. In high … the University of Konstanz and the University of Vienna  reported recovering draft metagenome-assembled genomes for …
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JGI@25: Solving the Mystery of the Missing Oil
… between.” To find an explanation, his team tracked the thousands of bacterial and archaeal species using a DNA-based array developed at Berkeley Lab. Over the …
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Pinning Down a Piece of Photosynthesis
… an array of experiments at universities and national user facilities, researchers found that this protein detects … we were able to work with on this project to ask questions about structure and function,” Blaby-Haas said.  Looking at … very complex CTRL+F search for this domain, looking for context clues that might point them toward the domain’s …
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10 From JGI on the 2019 Highly Cited Researchers List
… includes 10 affiliated with the JGI . The 2019 list focused on Highly Cited Papers, defined in the Methodology … each of these researchers were involved in that were reported on over the last year: Kerrie Barry and Jeremy … gradient across the United States. Go here to learn more about the project . Igor Grigoriev and Asaf Salamov were …
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FICUS-NERSC/KBASE
… Genome Institute is to serve the scientific community as a user facility pioneering functional genomics to solve the … for proposals in biological data science as part of the FICUS initiative. Proposals submitted to the JGI-NERSC-KBase call do not use the Letter of Intent; rather proposals are submitted in …
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SPRUCE-ing Up Science
… of biology and computer science, to reveal clues about how microbial and bacteria communities influence the … places like Minnesota for example, despite taking up only about 3% of the planet’s landmass, peat moss and their … on his PhD program at UC Merced in 2013, this field was just beginning to develop and expand into the world of …
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What Happens Underground Influences Global Nutrient Cycles
… DOE user facilities EMSL and JGI announce FY 2020 collaborative … the Sierra Nevada mountain range since 2014 to learn more about the microbial responses and feedbacks to warming … (B2 TRF) biome at the University of Arizona to learn more about climate change feedbacks including drought and …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… technology has changed dramatically over the last  25-plus years since the JGI’s inception, making it possible for … computing infrastructure and analysis. This way, JGI users — both primary, data-generating users, as well as secondary, data-downloading users — have …
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Streamlining Regulon Identification in Bacteria
… sigma factors that initiate transcription in bacteria. Using this technology, which combines an in vitro … coelicolor . The Impact As an integrative genome science user facility, connecting genes to functions is part of the … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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How to Target a Microbial Needle within a Community Haystack
… targeted genomic approach would allow researchers to focus on specific microbes within metagenome samples and … traditional shotgun metagenomics approach to learning more about environmental samples starts with researchers first … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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