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Marine Microbe Contains Multitudes
… different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific … Boeuf and colleagues set sail on research cruises in 2015 and 2016. At Station ALOHA , site of the 30-years-long … at the U.S. Department of Energy Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Gotta Catch 'Em Gall
… called galls.  In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's metabolomics program to find out more about these weird little pods. …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… enzyme family evolved across 90 species. “One unique thing about this work was our focus on all the kingdoms, including animals, plants, bacteria, … enzymes across 90 species. They queried the genomes of 15 species from each of six kingdoms: eubacteria, archaea, …
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Permanent draft genome sequences of the symbiotic nitrogen fixing Ensifer meliloti strains BO21CC and AK58
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A Plant Root Atlas for Tracking Developmental Trajectories
… patterns in the  Arabidopsis root, profiling nearly 100,000 single root cells and combining the information with previously published datasets. The work was  recently published in … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Waiting to Respire
… to gain and harness energy. As reported January 28, 2019 in Nature Communications , two research teams joined … popularizer and communicator (and at one time, the spouse of Lynn Margulis). The information was then used to … of UC Berkeley geomicrobiologist Jill Banfield, a longtime JGI collaborator, postdoctoral fellow Paula Matheus …
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Accelerating Metagenomics Discoveries with Deep Learning
… workshop, Volkan Sevim, a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), presented on generating vector representations of … is part of the JGI Genome R&D Group and is one of more than 100 scientists and systems engineers involved in …
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Honey Bee Gut Microbiota Divvy Up Dinner
… of the National Academy of Sciences . The team focused on the dominant bacterial clades shared between honey … pollen’s pectin and hemicellulose are degraded mainly by just two clades:  Gilliamella,  which mostly resides in the … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Identifying the Microbial Cleanup Crew at a Superfund Site
… involved in a bioremediation effort. The Science In 1999, the Environmental Protection Agency declared the North … Dehalococcoides mccartyi and  Dehalobacter restrictus,  that work together to break down PCE into the chemical … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Alabama A&M Interns Access An Abundance of Knowledge
… an internship program to bring students to the JGI for research training experience. Enabled by the DOE … fellow interns and scientists alike. Want to learn more about their experience? Watch the short video below. Video … fall for my master’s in plant soil science and my career focus is plant breeding. Ti’Yanna Watson: My mentor is Dr. Yi …
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Environmental Genomics Group
Research in the Eloe-Fadrosh group focuses on using genome-resolved metagenomic approaches to … for stable isotope probing metagenomics . mSystems , e01280-22. 10.1128/msystems.01280-22 Clum, A. et al. (2021)  DOE JGI metagenome workflow …
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Draft Genome Sequence of Frankia sp. Strain CN3, an Atypical, Noninfective (Nod–) Ineffective (Fix–) Isolate from Coriaria nepalensis
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