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Accelerating Metagenomics Discoveries with Deep Learning
… workshop, Volkan Sevim, a computational biologist at the US Department of Energy (DOE) Joint Genome Institute (JGI), … that low sequence identity may belie. The technology he’s using is magical; transform any length of amino acid … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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A Plant Root Atlas for Tracking Developmental Trajectories
… single root cells and combining the information with previously published datasets. The work was  recently published in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Ancient Algae Reveal Secrets of Plant Evolution
… to terrestrial life paves the way for innovations in sustainable agriculture and clean energy. These evolutionary … in marginal lands and with minimal resources. Enabling the use of non-arable land for biomass production — that can be … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Mindfully Moving JGI
… from Walnut Creek to the heart of the Berkeley Lab campus. By Friday, October 18, the production sequencing labs in … home located in the heart of the Berkeley Lab main campus. On Monday, November 11, a week after they’d been  moved … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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The Power of One, Amplified
A preview of how large-scale single cell genomics complements … genomics can add significant value to the other commonly used culture-independent sequencing approaches including … the planet’s nutrient cycles and are potentially of use in fields ranging from agriculture to biotechnology and …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… and around Earth outnumber the stars in the Milky Way, viruses outnumber the microbes by at least another order of … at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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The Surprising Structure of a Shrub Willow Sex Chromosome
… in mammals: a structure that helps correct deleterious mutations. The Impact Shrub willow and its close relative  Populus trichocarpa,  or the poplar tree, are potential biofuel … willow is flipped: females are heterogametic. To avoid confusion with the mammalian system, the sex chromosomes are …
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JGI Pitches 2022 Visiting Faculty Program Collaborations
… are solicited annually for the summer term (May through August) and selected projects will receive stipend and travel …
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Katherine Louie
… the metabolomics capabilities and product offerings for JGI users.  Using cutting-edge mass spectrometry-based techniques, the … of the root-associated microbiome in maize (Zea mays). Scientific Reports. 2021. doi:10.1038/s41598-020-79320-z 3. …
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JGI@25: Using Team Science to Build Communities Around Data
Spatafora and Jason Stajich from UC Riverside would focus on broad sampling of early diverging fungi, and Francis … National Institute for Agricultural Research (INRAE) focused on in-depth exploration of ecology-related groups of … genomes in progress and 200 that are pending samples from users. Roughly 300 have been published. Spatafora said the …
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JGI@25: The Little Alga That Could
… production in other algae that may be more viable for sustainable biofuel production. The JGI published a partial … been cited in almost one-fourth (23.8%) of publications focused on that specific algae. The reference genome is cited … work with Olivier Vallon of the French National Centre for Scientific Research on the Chlamy pan-genome and Marina …
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The Expanding Universe of Methane Metabolisms in Archaea
… insights into an ancient metabolism. Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, for publicly available metagenome data … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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