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Fungal diversity and function in metagenomes sequenced from extreme environments
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High-quality draft genome sequence of Thermobifida halotolerans DSM 44931
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Gaia: An AI-enabled genomic context–aware platform for protein sequence annotation
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Connecting chemical and protein sequence space to predict biocatalytic reactions
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2021 JGI Proposal Call Brings New Investigators into Community Science Program
… to as natural products, the proposal includes plans to sequence several thousand Actinobacteria strains and then … through photosynthesis, but only a fraction have been sequenced.  Adriana Lopes dos Santos from Singapore’s … Nanyang Technological University aims to generate genome sequences from underrepresented green algae groups in a wide …
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Rex Malmstrom
… genetic material, thus bypassing the need to culture these microbes in the lab. After joining the JGI, he formed the … that provides JGI users access to the genomes of uncultured microbes.  His group also handles the Stable Isotope Probing …
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Innovative Technology Improves Our Understanding of Bacterial Cell Signaling
… also regulates enzymes involved in cellulose production in microbes, these biosensors may eventually lead to ways to … Ec YcgR, within the Nano-lantern scaffold. They then mined sequence databases for homologous YcgR proteins and chose a … These 92 homologues were synthesized as codon optimized sequences and cloned into the Nano-lantern scaffold. Because …
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Iron-rich Microbial Mats’ Main Players: Marsarchaeota
… conditions. Additionally, high-temperature (thermophilic) microbes are of interest for their potential use in number … thousands to millions of copies of a particular DNA sequence from just a few pieces of DNA. Summary The extreme … may have been important to the early evolution of these microbes. …
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Doubling Down on Known Protein Families
… Nature highlights the vast array of functional diversity of microbes through a novel approach to better understand … the process hinges on referencing to existing genome sequences.  Some of these proteins are what the scientists … artificial intelligence to decode the language of protein sequences and obtain hints of their possible functions. Yet …
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Complete Genome Sequence for Asinibacterium sp. Strain OR53 and Draft Genome Sequence for Asinibacterium sp. Strain OR43, Two Bacteria Tolerant to Uranium
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
… to the way many organisms function, they have a sense of why nitrogen metabolisms can be so varied.  As evolution has … different Swiss Army knives — explaining a bit more about why and how nitrogen metabolism is so robust and varied.  …
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JGI Announces FY26 Large Scale Portfolio for Our Community Science Program
… the research consortium aims to generate over a terabase of sequence. “We are thrilled to support this year’s CSP … approaches to unravel functional capabilities of plants, microbes and microbial communities, and understanding of …
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