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JGI Accepts 17 Proposals for Community Science Program
… proposals highlight biodiversity and how ecosystems are adapting to stresses. A total of 17 proposals have been … Lawrence Berkeley National Laboratory (Berkeley Lab). They were selected through peer review from 41 full proposals out … are led by researchers, including Nelson and Roth, who have not been a principal investigator on a previously …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that … unknown and uncultured in laboratories. Other firsts followed. The next year, the JGI team reported the first closed … the continuing single cell sequencing collaboration between the JGI and Bigelow Lab led to the identification of …
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A Plant Root Atlas for Tracking Developmental Trajectories
… of British Columbia, Philip Benfey at Duke University and Uwe Ohler at   Humboldt Universität zu Berlin   has developed … track cell development and how they determine identity, as well as the roles played by neighboring cells in these … for non-model species for which fewer ‘marker’ genes are known that are hallmarks of different cell types.” His …
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The Expanding Universe of Methane Metabolisms in Archaea
… metagenome datasets from a variety of environments, as well as tools for analysis. “There is evidence that … it emerged and how it gave rise to the different pathways we see today is not only important to understand early life, … belongs to Korarchaeota Drs. Luke McKay and William Inskeep are co-authors on the Borrel et al. study described above, …
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Three Join the JGI User Executive Committee
… The JGI User Executive Committee (UEC) recently welcomed three new members earlier this month – Sneha … Microbiome Data Collaborative (NMDC) Champion. As an early career investigator, she is committed to representing and … Genomics of Energy & Environment Meeting. Any investigator who has been an active user of the JGI at any time in the …
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Extracting the Secrets of Secondary Metabolites
… Combining CRAGE with CRISPR provides researchers with a powerful addition to their toolkit to study gene function. As … that produce them. The Impact Secondary metabolites are microbial compounds produced in response to hardship or … and other industries — yet there’s still so much about them we don’t know.  Unlocking the power of secondary metabolites …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that … has a large polyploid genome, which means most genes are found as multiple copies across the chromosomes. In a … of research, switchgrass has become an important species whose complex genomes are helping breeders understand how …
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What Happens Underground Influences Global Nutrient Cycles
… proposals addressed one of the following focus topic areas: Biofuels and bioproducts, Biogeochemistry, and … microbial responses and feedbacks to warming through the whole soil profile. The goals of their FICUS proposal … interactions is one from Jason McDermott of Pacific Northwest National Laboratory (PNNL). The proposal focuses on an …
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JGI@25: The Human Genome Project, or the JGI’s Origin Story
… In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that … Security Administration to maintain the U.S. nuclear weapons stockpile and was interested in investigating the … Head and current ESnet Deputy Director of Operations, shares her story of what it was like on the frontlines at the …
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Triggering Morel Fruiting
… on just how morel fruiting is triggered when nutrients are acquired from an external source.  The work is part of … matter and fertility of the soil. Morels (Morchella spp.) were previously considered uncultivable wild mushrooms, until Ronald D. Ower, a researcher from San Francisco State University, …
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JGIota: The Algae Nicknamed ‘Chlamy’
… & Systems Biology Division of the Berkeley Lab Biosciences Area.] …
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An Automated Tool for Assessing Virus Data Quality
… and computational approaches, more and more virus sequences are being recovered and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled … can be difficult, akin to the story of the blind men who encounter an elephant for the first time. Based on the …
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