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Olpidium, The Key to the Origin of Terrestrial Fungi
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, found that the fungus Olpidium is a link in … habitats. The work is part of the JGI’s 1000 Fungal Genomes Project, which aims to provide genomic information for every family of fungi. In the following guest piece, JGI user Ying Chang in the Spatafora lab describes the effort …
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2022 Progress Report
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National Laboratory … Lab), is to become the leading integrative genome science user facility enabling researchers to solve the world’s …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses … emphasized, the contributions of the numerous JGI science users in collecting and submitting their microbiome samples …
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DAS Tool for Genome Reconstruction from Metagenomes
… The work aligns with the ETOP mission of providing JGI users with the most current technology and expertise in … genomes with >90% completeness. These results, noted JGI User Programs Deputy Susannah Tringe , suggest that extracting …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… after the JGI was established to work on the Human Genome Project in 1997. She was a group lead at Stanford Human … of Impact.     Notable large-scale multi-institutional JGI projects and resulting publications that Grimwood … ) several years ago.   As well as the seminal Human Genome Project DOE Chromosome publications: The DNA sequence and …
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A One-Stop Shop for Analyzing Algal Genomes
… genomic data on algae into one place, PhycoCosm allows users to easily compile data that answers what genes are … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the chloroplast. In the cases where data are available, a user can also analyze gene expression from published …
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Georg Rath
… from JGI’s science and production sequencing programs. …
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SPRUCE-ing Up Science
… . “There was a lot of freedom to explore,” he recalled. His project involved developing an algorithm and although the … to develop a tool that leveraged machine learning to help users determine which computer program would best serve … information. According to Lawrence, this summer project aligned with his computational background and …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
… the primary author on this publication and drove the entire project, Visel explained. She continued working virtually … Practical Applications for Fungi Wint began working on the project that culminated in this publication during her summer internship in 2018. She selected one of the projects posted by JGI fungal researchers, Igor Grigoriev …
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Ian Blaby
… 10, 2743-2769. 2015 Blaby et. al., The Chlamydomonas genome project: a decade on. Trends in plant science . 19: 10, …
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JGI announces 2024 Functional Genomics awardees
… Through our CSP Functional Genomics call , we look for projects that will leverage the JGI’s DNA synthesis and … in support of advancing the bioeconomy.  This year’s project goals range from improving crop productivity for … atmospheric carbon sequestration into sustainable biomaterials, and developing high-throughput methods to reveal …
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Identification and characterization of a skin microbiome on Caenorhabditis elegans suggests environmental microbes confer cuticle protection
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