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Metagenome-assembled genomes from microbial communities producing lactic acid from dairy residues
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Variability in depth-mediated shifts in methanogen and methanotroph communities across tropical Andean mountain peatlands
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The relationship between gene traits and transcription in soil microbial communities varies by environmental stimulus
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Methane-fed microbial communities enriched from field-grown rice support diverse heterotrophic bacteria
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RECAP: Multi-Omic Journeys with 2023 JGI Annual Meeting Keynotes
… invited speakers shared how research infrastructure – DNA sequencing, synthesis, metabolomics, data analysis, and new … Northern Arizona University Interrogating the microscopic communities at work around the globe Keynote Talk Title : … that the JGI has put together. In collaboration on a project with the Newman lab, an important question arose: …
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Enlarging Windows into Understanding Gene Functions
… JGI innovates protocol revealing how genetic variations in sequences affect traits. In a text file, the rows of … genes are turned on is known as DNA affinity purification sequencing or DAP-seq. The technology was developed by Ronan … Program (CSP) focuses on a fungal comparative ENCODE project known as FUNCODE. “We noticed a few years ago that …
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SIPs with Standards
… (SIP) is a powerful technique for studying microbial communities. These experiments can show which microbes are … and more insightful, for the future of studying microbial communities.   …
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How Microbes Can Protect Plants in Drier Straits
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Mapping Heat Resistance in Yeasts
… A new approach for improving functional annotation in fungal genomes. The Science In a … production. Efforts such as the 1000 Fungal Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE … aim to improve our understanding of fungal diversity by sequencing genomes from across the fungal Tree of Life, but …
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Soil virus offers insight into maintaining microorganisms
… researchers have identified a virus protein tied to carbon cycling.  The Science Through a collaborative effort, … of Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Using 5,000 images of … which can have a significant impact on the microbial communities within soil. Using metagenomics, scientists can …
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Shotgun metagenome data of a defined mock community using Oxford Nanopore, PacBio and Illumina technologies
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Ecological and genomic responses of soil microbiomes to high-severity wildfire: linking community assembly to functional potential
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