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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground … the nature of this symbiosis at the cellular level — really understand how those two cell types [of two different … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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A photoactive carotenoid protein acting as light intensity sensor
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Complete genome sequence of Mesorhizobium australicum type strain (WSM2073T)
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Annotation of metagenome short reads using proxygenes
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Tracing the Evolution of Shiitake Mushrooms
… takes a  genomic look at Lentinula samples from around the world. By complete sequencing of 24 new mushroom genomes, … sequences, this work expands the family tree for Lentinula. Within those samples, this study also tracks the enzymes … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… on microbial communities than ever before — especially with the prospect of meta-analyses boosted by AI and Machine … this group, as well as feedback from researchers around the world, the team have now published a  Minimum Information … efforts — that as the data gets churned out, we start to really see the utility of them broaden,” Wilhelm said.  …
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I-Min (Amy) Chen
… currently the Microbiome Computational Resource Lead at the JGI, responsible for the data management infrastructure of … updates and new features. Nucleic acids research Jan 2023 Camargo AP, Nayfach S, Chen I-MA, Palaniappan K, Ratner … IMG/VR v4: an expanded database of uncultured virus genomes within a framework of extensive functional, taxonomic, and …
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Year in Review: JGI’s 2018 Progress Report Available Now
The latest edition of the JGI Progress Report highlights notable research and scientific collaborations in 2018. The cover is an image of Mono Lake, a saline soda lake east of California’s Yosemite National Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … in two subsurface ecosystems in very different parts of the world: Crystal Geyser, Utah, USA, and Horonobe Underground … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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User Support Analysis Group
… computational analysis for new technology development and JGI user science projects. We perform analysis for diverse experiment types, with main focus areas being genome variation, … of highly customized analysis workflows for new product types, to the development of automated analysis …
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Cultivating Symbiotic Antarctic Microbes
… of soil-sediment environments, water and air-atmosphere with the humans and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … genome size. The obligate symbiont’s genome is often reduced compared to that of a free-living organism. First …
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MeCorS: Metagenome-enabled error correction of single cell sequencing reads
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