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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
A new view into a symbiosis could offer benefits to address climate change: pulling … organisms share space at cellular scale: fungi stretch a network of tendrils called arbuscules into a plant’s root … to study both sides of this interaction up close, using RNA sequencing to understand gene expression: one of the …
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Marine DNA methylation patterns are associated with microbial community composition and inform virus-host dynamics
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Metagenomic and Metatranscriptomic Analyses Reveal the Structure and Dynamics of a Dechlorinating Community Containing Dehalococcoides mccartyi and Corrinoid-Providing Microorganisms under Cobalamin-Limited Conditions
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Rumen metagenome and metatranscriptome analyses of low methane yield sheep reveals a Sharpea-enriched microbiome characterised by lactic acid formation and utilisation
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Contrasting Community Assembly Forces Drive Microbial Structural and Potential Functional Responses to Precipitation in an Incipient Soil System
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Degradation Reduces Microbial Richness and Alters Microbial Functions in an Australian Peatland
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The microbial ecology of permafrost
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Microbial Diversity for Biotechnology
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… ice in the Arctic has decreased by more than 30% in terms of quantity and thickness. Replacing older, thicker ice with … of dead cells recorded. Samples were taken again at two, six, 12 and 24 hours. By the 24-hour mark, these algae … uptake and decreased cell death.  Scientists then extracted RNA to analyze gene expression, to determine which genes are …
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Graduate Students Get Thesis Research Opportunity at the JGI
Twice a year, the DOE Office of Science Graduate Student Research (SCGSR) program … JGI-UC Merced Internship Program was developed between the two institutions to help train the next generation … aid the accessibility and reproducibility of my project methods, and I hope that this open-source platform will be …
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Accelerating Metagenomics Discoveries with Deep Learning
… insights from metagenomic data. In deep learning, a branch of machine learning, data is passed through algorithms … of these algorithms, inspired by communication networks found in nature, allows machines to “learn” features. … two vectors,” said Sevim.  While there are alignment-free methods for nucleotide searches, such as  Mash and  BBsketch …
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You Can Move, But You Can’t Hide
… seek to replicate themselves and spread from cell to cell. Two of the most common forms of MGEs are viruses and plasmids. They can be found in …
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