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Massive lateral transfer of genes encoding plant cell wall-degrading enzymes to the mycoparasitic fungus Trichoderma from its plant-associated hosts
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16S rRNA Gene Amplicon Sequencing Data from Flooded Rice Paddy Mesocosms Treated with Different Silicon-Rich Soil Amendments
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Metagenomic analysis of intertidal hypersaline microbial mats from Elkhorn Slough, California, grown with and without molybdate
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Draft Metagenome Sequences of the Sphagnum (Peat Moss) Microbiome from Ambient and Warmed Environments across Europe
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JGI@25: Stories from Intern Alumni
… . Over the next few months, we’ll be revisiting a number of notable achievements that showcase our collaborations and … Over the past 25 years, the JGI has hosted interns from a number of universities and organizations. From field research and …
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How Much Do rRNA Gene Surveys Underestimate Extant Bacterial Diversity?
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GenePRIMP: a gene prediction improvement pipeline for prokaryotic genomes
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Identification and distribution of the NBS-LRR gene family in the Cassava genome
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I-Min (Amy) Chen
… data modeling, and biological data management. She was one of the co-authors and key developers of the Object-Protocol … the development of key components of Gene Logic’s flagship Genesis data management platforms for gene expression data, … in an Academic Setting, SSDBM 14, July 2014 … Selected Publications …
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Krishna Palaniappan
Krishna is responsible for the design and maintenance of the Integrated Microbial Genomes (IMG) data warehouse, and integration of genomic and metagenomic data with transcriptomics and proteomics data. …
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Streamlining Regulon Identification in Bacteria
… up associating transcription factors with their target genes. The Science Regulons are a group of genes that can be turned on or off by the same regulatory … regulatory network in bacteria, enabling the discovery of regulatory cascades as well as crosstalk …
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Genesis and Expansion of Metazoan Transcription Factor Gene Classes
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