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VirSorter2: a multi-classifier, expert-guided approach to detect diverse DNA and RNA viruses
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Promoter elements associated with RNA Pol II stalling in the Drosophila embryo
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Parallel Evolution of Truncated Transfer RNA Genes in Arachnid Mitochondrial Genomes
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JGI@25: Building a Better Bean
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements … assembled a 473-million basepair genome of the common bean, identifying genes related to disease-resistance, flowering …
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Igor Grigoriev
Dr. Grigoriev joined the DOE Joint Genome Institute in 2003, following his postdoctoral training at UC Berkeley and … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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Learning to Look
Machine learning approach significantly expands inovirus … than 70,000 microbial and metagenome datasets, ultimately identifying more than 10,000 inovirus-like sequences … with other co-infecting phages and with the host’s CRISPR-Cas immunity systems. Countering Co-Infections, …
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Marine Microbe Contains Multitudes
A deep dive into microbial genomics reveals one bacterial species is made of four ecologically distinct groups with different lifestyles. The Science The bacterium SAR324 is unusually cosmopolitan. In the ocean’s North Pacific …
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Metatranscriptomic reconstruction reveals RNA viruses with the potential to shape carbon cycling in soil
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From Berkeley to Binghamton: Tracking Strawberry Evolution
In the summer of 2015, Adam Session was a postdoc working at the DOE Joint Genome Institute with Dan Rokhsar, who … said. “This approach could work if genes from all possible candidate ancestors are available. Our method clearly …
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Emiley Eloe-Fadrosh
Dr. Eloe-Fadrosh joined the JGI in 2014 to pursue her research interests in … al. 2016. Global metagenomic survey reveals a new bacterial candidate phylum in geothermal springs. Nature … Futures … Metagenome Science Program … Education … Selected Publications … Awards and Service …
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Natural Prodcast Episode 6: Marc Chevrette
… … DAN: You’re listening to the US. .Department of Energy Joint Genome … project by watching Amanda Hurley’s presentation from the 2019 JGI Genomics of Energy & Environment Meeting.] He’s … are going to be involved in signaling. We’re not perfect at identifying what these pathways are yet. So there’s still a …
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Enlarging Windows into Understanding Gene Functions
JGI innovates protocol revealing how genetic variations in sequences affect traits. In a … Technologies Group. In an article published November 25, 2021 in Nature Methods , JGI researchers led by co-first …
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