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Construction and comparison of three reference‐quality genome assemblies for soybean
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Genomic Characterization of Methanomicrobiales Reveals Three Classes of Methanogens
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The Impact of Genome Analyses on Our Understanding of Ammonia-Oxidizing Bacteria*
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Arboriscoccus pini gen. nov., sp. nov., an endophyte from a pine tree of the class Alphaproteobacteria, emended description of Geminicoccus roseus, and proposal of Geminicoccaceae fam. nov.
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Predicted structural proteome of Sphagnum divinum and proteome-scale annotation
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Pinning Down a Piece of Photosynthesis
By studying the structure and function of a cyanobacterial protein, researchers have new insights into how these ocean photosynthesizers cycle carbon in … scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User …
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JGI announces final round of 2022 Functional Genomics awardees
Twice each year, the JGI accepts proposals for state-of-the-art … users who need help translating genomic information into biological function. Through our CSP Functional Genomics … and omics capabilities to enhance understanding of gene and genome function.  Below find a list of the final six …
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An Enzyme Family that Helped Shape Nitrogen Metabolism on Our Planet
Researchers looked across many organisms to see that … of these enzymes across 90 species. They queried the genomes of 15 species from each of six kingdoms: eubacteria, … eukaryotes having slightly larger numbers due to their expanded metabolisms. These ATs can operate in a relatively …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … assess CRAGE’s impact, including how this application could scale,” says Mouncey. The JGI team has already demonstrated … in  PLOS One , engineering different gene deletions in four gammaproteobacterial species, and then removing the …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows … ago, a team discovered a group of viruses that had in their genomes a surprising tool: a “diversity generating …
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Comparative genomics and physiology of the genus Methanohalophilus, a prevalent methanogen in hydraulically fractured shale
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Tanja Woyke
After studying the mechanism of action of antifungal natural … 35, 725-731. Mukherjee et al. 2017. 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. Nature Biotechnology 35, … User Programs … Education … Awards and Service … Selected Publications …
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