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Inspiring STEM Careers Through a Hands-on Everglades Microbiome Study
… Journal publication caps JGI pilot project with fledgling Florida … . “After discussing the project with him, I was inspired by his enthusiasm and drive to give his students this … able to tell the students that the paper was accepted for publication in a reputable scientific journal. It was …
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Annual Genomics of Energy & Environment Meeting
… us at the 2024 DOE Joint Genome Institute (JGI) Annual Genomics of Energy & Environment Meeting! The JGI convenes …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… the stars in the Milky Way, viruses outnumber the microbes by at least another order of magnitude. For years, … their expertise in developing and managing public viral genomics resources such as analytical tools and data … and Simon Roux. Kyrpides is part of another project led by Owen White at the University of Maryland, Baltimore. Both …
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A Grass Model to Help Improve Giant Miscanthus
… into how the multiple chromosomes of Miscanthus arose by ancient hybridization (polyploidy) and insights into the … M. sinensis was recently published in Nature Communications by an international, multi-institutional team. The work was a joint effort led by scientists at the Center for Advanced Bioenergy and …
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Team Science Reveals Important Protein in Poplar
… be hybridized to produce desirable traits.  Partly enabled by the JGI  Community Science Program New Investigator … in   iron deficiency response, formation of secondary cell walls (biosynthesis), and integrating molecules that … was overexpressed, those plants had stunted growth, weaker cell walls, and were less resistant to disease compared to …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
… has released its newest 5-Year Strategic Plan: Innovating Genomics to Serve the Changing Planet (download a copy at … and environmental remediation—all priorities identified by the DOE Office of Biological and Environmental Research … might contribute to the emergence of new pathogens. “ By sharing our vision broadly across Berkeley Lab, with …
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Waiting to Respire
… ability to produce their own food and generate oxygen as a byproduct. The abundance of oxygen shaped the evolution of life on Earth, and led to the development of multicellular organisms. Not all bacterial lineages harnessed … Facility, and research scientist Frederik Schulz in Woyke’s Single Cells group had generated and analyzed single …
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Leo Baumgart
… bacteria, fungi, and plants. His team is also developing single-nuclei sequencing methods to characterize gene regulation at the level of individual cells across diverse plant tissues. Dr. Baumgart focuses on expanding functional genomics capabilities through process automation and method …
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Learning to Look
… July 22, 2019, in  Nature Microbiology , a team led by scientists at the U.S. Department of Energy (DOE) Joint … inoviruses, which are filamentous viruses with small, single-stranded DNA genomes and a unique chronic infection … are stealth agents that can enter and exit through the cell membrane without lysing the bacterial host. They can …
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Engagement Webinar: Harnessing JGI’s Metabolomics Capabilities
… directly measure environmental or biological samples (like cell media or lake water) without doing a metabolite … analyses? A:  For the JGI  New Investigator and  Functional Genomics proposal calls, projects can request up to 50 polar … resources. Q:  Where can I get information for funding by JGI? A: The JGI is not a funding organization. Rather, it …
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First Monoploid Reference Sequence of Sugarcane
… approach that focused on the gene rich part of the genome by harnessing information from a sequenced related species – … using molecular biology techniques has been hampered by the crop’s highly polyploid genome, which makes … used to define a minimum tiling path of sequences in a single contiguous region. The JGI sequenced half of the …
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A User-Centered Approach to Accessing JGI Data
… of ‘baseline metadata’ across the files that are submitted by each scientific program,” he said. “If each kingdom … The JGI Data Portal currently allows users to find files by searching file metadata (info describing the files) We … requires that users know about the FY Funding Year, and the publication status in addition to the public/private status. …
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