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Mapping Heat Resistance in Yeasts
… for improving functional annotation in fungal genomes. The Science In a proof-of-concept study, researchers … Genomics Project led by the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility of Lawrence Berkeley National Laboratory, aim to improve our understanding of fungal diversity by sequencing genomes …
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You Can Move, But You Can’t Hide
… mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic entities … National Laboratory (Berkeley Lab), with computing resources provided by NERSC, another user facility at Berkeley … genomics of MGEs and their evolution at the cellular level, scientists can better understand ecosystem-wide processes. …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… when it comes to breaking down tough plant fibers. The Science Walk in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. Both bacteria and fungi have genes that can break … proteins in the samples were then isolated and sequenced by scientists at the Environmental Molecular Sciences …
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Marker-free carotenoid-enriched rice generated through targeted gene insertion using CRISPR-Cas9
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Targeted in situ metatranscriptomics for selected taxa from mesophilic and thermophilic biogas plants
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Metabolic model predictions enable targeted microbiome manipulation through precision prebiotics.
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Doubling Down on Known Protein Families
… that single beam. When it comes to microbial communities, scientists have historically been unable to see beyond the … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … diversity has doubled, but in reality it could be three or four or five or tenfold more out there.” Digging Further into …
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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome Institute. His team of engineers and scientists builds and operates the data and compute … and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled …
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Model Fern Reveals Insight into DNA Thievery in Ferns
… Open Green Genomes hits milestone with C. richardii The Science Fern genomes are huge, and incredibly complex — … secondary metabolites and associated genes are great resources for bioremediation, new agricultural applications or … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Pinning Down a Piece of Photosynthesis
… Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … National Laboratory’s National Synchrotron Light Source II, and SLAC National Accelerator Laboratory’s … in complementary ways to investigate this protein domain. Scientists at Brookhaven National Laboratory’s NSLS-II used …
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Data Discovery Tool Helps Identify Microbial Roles within Metagenomes
… provide insights into environmental tendencies The Science The  Metagenome Stability Diagram — a tool within … (IMG/M) platform — has been developed to help inform scientists and researchers more about the patterns and … mSystems paper , a team at the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… this “ data tsunami ,” as Kathy Yelick of the Computing Sciences Area at Lawrence Berkeley National Laboratory … to create pipelines, tools and other standardized data resources that the global research community can access and use … These advanced computing capabilities meet the needs of scientists out in the field, and developing such tools has …
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