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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
Tel Aviv University in Israel, the National Center for Biotechnology Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … system. “We then looked into many more samples and refined our methodology,” Neri said. “Our team grew and so did the …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the Earth’s … as carbon sinks and minimize their role as carbon sources. Summary Sphagnum, a genus of just under 400 mosses … National Laboratory, and the HudsonAlpha Institute for Biotechnology sequenced sphagnum  genomes from plants selected …
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JGI-UC Merced Interns Share Their 2021 Experiences
During the summer of 2021, 13 interns from UC Merced spent eight weeks working … JGI mentors to investigate rigorous research projects, hone science presentation skills, and participate in professional … genomics and to help foster a diverse future workforce in science. To learn more about each intern’s experience during …
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The Power of One, Amplified
… single cell genomics complements metagenomics studies. The Science Researchers demonstrated the value of conducting … potentially of use in fields ranging from agriculture to biotechnology and medicine, the vast majority in, on, and … microbial populations. The work appeared in The ISME Journal . Members of the Dunfield lab collected samples from …
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Tracking the Origins of Methane-Producing Microbes
… published in the Proceedings of the National Academy of Sciences , researchers at Stanford University, the Chan … that were then sequenced separately. From these samples, 111 metagenome-assembled genomes (MAGs) were recovered, most … These two things combined led us to conclude that our new methanogen did not belong to the Euryarchaeota, the …
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Supercharging SIP in the Fungal Hyphosphere
… helps ID novel interactions between bacteria and fungi The Science Researchers have successfully automated aspects of a … with potential applications in industry and biotechnology for the production of  clean energy . Summary … of Energy Joint Genome Institute ( https://ror.org/04xm1d337 ), a DOE Office of Science User Facility, is supported …
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In Hot Spring Microbial Mat, Viruses Ride “Piggyback”
… described host-virus dynamics in a microbial mat. The Science In microbial mats, communities of microorganisms … interactions. This work,  recently published in  The ISME Journal , by contrast, relied on methods that eschew … the virus had been infecting the cell. The team assembled 130 genomes from their sample — a small proportion of the …
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Triggering Morel Fruiting
… led by Hao Tan from the Sichuan Academy of Agricultural Sciences in China and involving Francis Martin from the … is triggered when nutrients are acquired from an external source.  The work is part of the JGI’s 1000 Fungal Genomes … by the black morel, as well as the gene-expression programs encoding the biochemical processes unveiled by …
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2022 Progress Report
Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National … (Berkeley Lab), is to become the leading integrative genome science user facility enabling researchers to solve the …
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Synthetic Biology Informatics Group
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10 From JGI on the 2019 Highly Cited Researchers List
Clarivate Analytics, formerly the IP & Science arm of Thomson Reuters, has released their 2019 list … categories Microbial Systems research group lead and User Programs Deputy Susannah Tringe, Cross-Field category … for an uncultivated virus genome, including the source, methods of identification of the virus genome, and …
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JGI on the 2020 Highly Cited Researchers List
… in the top 1% by citations for field and year in the Web of Science.” Less than 6,200 researchers working in 21 fields … for  M. sinensis can both inform and benefit from breeding programs of related candidate bioenergy feedstock crops such … working to address some of the most pressing challenges of our time. For more information, please visit  …
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