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A Collaboration to Improve Plant Genome Annotations Across Species
JGI Plant Gene Atlas is a huge updateable transcriptome resource spanning diverse plant species. It was developed to … resource like this important to the field of plant genetics/genomics? Avinash: Having a better handle on the gene … one of which is sweet sorghum Rio from a JGI Community Science Program project and another is Lupinus albus from a …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the Metagenome Program. His … Pascal, France M.S. in Data Analysis and Modeling for Life Sciences, Université Blaise Pascal, France Ph.D. in … with long standing virus-host interactions. The ISME Journal 15, 1569–1584. Nayfach et al., 2020. CheckV assesses …
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2022 Progress Report
Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is home to the DOE Joint … Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision The … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National …
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Green Algae Reveal One mRNA Encodes Many Proteins
… reported in the Proceedings of the National Academy of Sciences , a team of researchers has found numerous examples … zofingiensis . “I was scrutinizing the genes of one of our species of algae and kept seeing what looked like … Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to clean energy …
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Researching and Solving Real-World Problems with the 2023 JGI-UC Merced Interns
… determination as they came onsite. From data carpentry to science communications, their schedules were filled with … Kamel, A Comparative Analysis of Metabolic Pathways in Fungal Pathogens Shayna Bennett and mentor Robert Bowers, … skills, wet lab skills and overall connections. Theo Loureaux : I wanted to first discover new methods with tools …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… revisited a number of notable achievements that showcase our collaborations and capabilities to enable great science that will help solve energy and environmental … about a multi-year study his student conducted involving fungal rust pathogen resistance. Just as the common gardens …
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Jeremy Schmutz
Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE relevant … 2023. JGI plant gene atlas: an updateable transcriptome resource to improve functional gene descriptions across the … Nature 590: 438-444. Mamidi, S et al. 2020. A genome resource for green millet Setaria viridis enables discovery of …
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Dan Rokhsar
… 2000 as the founding Associate Director for Computational Genomics, and led the computational efforts directed towards … animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome … Department and in 2002 he became a Professor of Genetics, Genomics and Development after his research interests …
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Crysten Blaby-Haas
Berkeley lab. She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working with Valérie de Crécy-Lagard on using comparative genomics to predict gene function in bacteria and leveraging … NIH Postdoctoral Researcher, UCLA … Handling Editor, Journal Experimental Botany, 2022 – present  University of …
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When “The Blob” Made It Hotter Under the Water
… climate change impact on marine microbial communities. The Science A team of researchers tracked the impact of a … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … as part of Hallam’s approved proposal through the Community Science Program . The proposal focuses on uncovering the …
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Eelgrass Proves to Be Much Younger Than We Thought
… about 2.5 million years less than previously believed.  The Science Eelgrass, one of the most abundant plants in the … many species able to occupy the regions where eelgrass flourishes. The plant can thrive in both frigid and tropical … Program (CSP 502951, 2016, Population and evolutionary genomics of host–microbiome interactions in Zostera marina …
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Yasuo Yoshikuni
Dr. Yasuo Yoshikuni has been head of the DNA Synthesis Science Program since 2015. The mission of this program is … Editorial board member of Synthetic Biology (Oxford Journal) Review committee member of International Journal of Molecular Sciences and Frontiers in Chemical …
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