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A chromosome‐scale reference genome of trifoliate orange (Poncirus trifoliata) provides insights into disease resistance, cold tolerance and genome evolution in Citrus
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The mitochondrial genome of the ethanol-metabolizing, wine cellar mold Zasmidium cellare is the smallest for a filamentous ascomycete
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Scaling High‐Resolution Soil Organic Matter Composition to Improve Predictions of Potential Soil Respiration Across the Continental United States
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… Trained on environmental data, a new JGI tool more accurately facilitates microbial genome … starting point to test the hypothesis. DNA as the World’s Oldest Language  DNA is among the oldest forms of … enhanced neural network architecture, GenomeOcean has shown improved computational efficiency of its modeling in the …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
… To engineer yeast to do more, and understand genomes in general, Jef Boeke, Weimin Zhang (NYU Langone … the goal is to create an entirely human-generated yeast genome. …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… Information, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … samples around the world, resulting in a five-fold increase of RNA virus diversity. “The world of viruses … higher-level classifications of virus groups (phyla.) The new sequences are filling in some gaps on existing virus …
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An Automated Tool for Assessing Virus Data Quality
… recovered and identified from environmental samples (metagenomes). However, the quality and completeness of metagenome-assembled virus sequences vary widely. In a previous … to help researchers assess and improve the quality of metagenome-assembled viral genomes . The Impact The microbes …
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Jane Grimwood Named HudsonAlpha Genomics Chair
… City. Grimwood is also co-director of the HudsonAlpha Genome Sequencing Center. Grimwood heads the Library … soon after the JGI was established to work on the Human Genome Project in 1997. She was a group lead at Stanford Human Genome Center directed by Richard Myers, and among the …
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A Community Resource for Secondary Metabolite Researchers
… over 1.3 million publicly available bacterial and archaeal genome and contig sources.  The Impact Secondary metabolites … or tools. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User … off past experience in developing a secondary metabolites portal within the Integrated Microbial Genomes and …
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Unique genomic traits for cold adaptation in Naganishia vishniacii, a polyextremophile yeast isolated from Antarctica
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DAP-seq Drives Robust Mapping of Gene Regulation
… Department of Energy (DOE) interests, this advancement holds the potential to expand opportunities for bioenergy and … sequences are moving around, disappearing and appearing in new places.” With new insights available, the power grid of … filtering criteria provides a robust community dataset of improved quality; deep insights identify the most important …
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Microbial Genomics & Metagenomics (MGM) Workshop
… has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day workshop on … designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for …
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