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Doubling Down on Known Protein Families
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … proteins with massively parallel computations.”  Guided by JGI scientists, the team embarked on a mission to unveil the … microbes. Harnessing the collective power of more than 26,000 microbiome datasets, all accessible through the …
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Fishing for Novel Cellulose Degraders
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of potential applications to industrial processes. Summary JGI researchers developed a function-driven, single-cell … and Environmental Research under contract DE-FC02-07ER64494. EG is supported by the NIGMS Biotechnology Training …
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Nikos Kyrpides
… dark matter through global metagenomics. Nature . 622(7983):594-602. Camargo AP. et al. (2023) Identification … Thousands of Small, Novel Genes. Cell. 178(5):1245-1259. Publications on Pubmed | Google Scholar … Thomson Reuters … Research and Analysis ( CAMERA ). … Education … Selected Publications … Awards and Service …
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Tracing the Evolution of Shiitake Mushrooms
… of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, this work expands the family tree … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … conducted by the US Department of Energy JGI (https://ror.org/04xm1d337), a DOE Office of Science …
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A new reference genome for Sorghum bicolor reveals high levels of sequence similarity between sweet and grain genotypes: implications for the genetics of sugar metabolism
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Complete genome sequence of Jiangella gansuensis strain YIM 002T (DSM 44835T), the type species of the genus Jiangella and source of new antibiotic compounds
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Help from Citrus’ Bitter, Hardier Cousin
… ravaging citrus groves: citrus greening. From 2012 to 2016, in Florida alone this disease caused an estimated $4 … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … UF/IFAS professor of citrus breeding genetics and longtime JGI collaborator, are senior authors of the  recent study …
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The More the Merrier: Making the Case for Plant Pan-genomes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … relative of the candidate bioenergy crop switchgrass and a JGI Flagship Plant. All three  Brachypodium  grasses have … a Pan-genomic Context For the study, partly enabled by the JGI’s  Community Science Program , the team generated …
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Trent Northen
… the ENIGMA SFA project. In 2015, he founded what is now the JGI Metabolomics Program to provide advanced metabolomic … Sci Data. 11, 339. https://doi.org/10.1038/s41597-024-03069-7  p.eadg7888. DOI: 10.1126/sciadv.adg7888 Treen D, et … … Metabolomics Science Program … Education … Selected Publications … Awards and Honors …
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Igor Grigoriev
… genomes, from protists to plants. In 2009, he launched the JGI Fungal Genomics program which resulted in over 2500 … by anaerobic fungi.  Nature Microbiol. 8(4):596-610. Nelson et al (2022) Wildfire-dependent changes in … … Fungal & Algal Science Program … Education … Selected Publications … Awards and Service …
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Simon Roux
Dr. Roux joined the JGI in 2017 to lead viral genomics research as part of the … in the global microbiome. Nature Communications 12, 3076. Roux et al., 2018. Minimum Information about an … Microbiology Resource Announcements … Education … Selected Publications … Awards and Honors …
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Two new high-resolution crystal structures of carboxysome pentamer proteins reveal high structural conservation of CcmL orthologs among distantly related cyanobacterial species
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