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Gotta Catch 'Em Gall
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Anuvia taps JGI for expertise to pinpoint products from beneficial soil microbes
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DAP-seq Drives Robust Mapping of Gene Regulation
… that flip genetic switches — bind DNA were limited to a few model species and involved slow, labor-intensive … to map regulatory “switches” in species beyond traditional models. Updates to DAP-seq build upon the previous version …
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GenomeOcean Leverages AI to Decode Nature’s Secret Language
… in genomics. Enter GenomeOcean, a powerful generative model  now available to the global research community able … genomic research — and is capable of discovering and modelling complex biological sequences such as biosynthetic … which it is available. Wang estimated that there are 500-800 genome foundation models available on the platform.  ”We …
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Annual Genomics of Energy & Environment Meeting
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The Expanding Universe of Methane Metabolisms in Archaea
… oxidation metabolisms. They also identified a set of 38 marker genes that serve as a core set of genes present in …
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Rex Malmstrom
… arbuscular mycorrhizal symbiosis. Nature Plants 10, 673–688 Vyshenska et al. 2023. A standardized quantitative … sorting slow-growing archaeal− bacterial consortia. PNAS 113 (28), E4069-E4078 Bendall, M.L. et al. 2016. Genome-wide …
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Gut Fungi: Unexpected Source of Novel Chemicals
… have potential to be used as precursors for polymers and commodity chemicals, as well as drop-in biofuels. This work … Contract Nos. DE-AC02-05CH11231 (JGI) and DE-AC05-76RL01830 (EMSL). CLS is also supported by a National Science …
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Virus Discoveries that Keep Getting Bigger
… 2020 Research and Innovation Programme (grant agreement no. 832601). …
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JGI Launches Latest Strategic Plan
… For the Joint Genome Institute, the end of 2018 was marked by a celebration of contributing over one …
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iPHoP: A Matchmaker for Phages and their Hosts
… into the same workflow, then uses a machine-learning model to give its integrated prediction a confidence score. … different suggested matches. The machine learning model in the iPHoP program creates a way of evaluating these different routes. To train the model, the team used 1,870 known virus-host pairs to generate a matrix of data …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
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