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The Sugar Metabolic Model of Aspergillus niger Can Only Be Reliably Transferred to Fungi of Its Phylum
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In-depth Spatiotemporal Characterization of Planktonic Archaeal and Bacterial Communities in North and South San Francisco Bay
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An Integrated Dataset to Understand Ecosystem Interaction
… tree and soil dataset for understanding the dynamic relationship between poplar trees and their microbial partners. … they are, a recent data set  outlined in  Scientific Data connects molecular features to large ecosystem-level … samples studied by researchers came from two environments: natural forests and plantations managed through human …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
In April 2020, we mark both the 50th celebration of Earth Day on April 22, and DNA Day on April 25. As both Earth and DNA …
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What Happens Underground Influences Global Nutrient Cycles
DOE user facilities EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, two Department of … A missing gene from this mutant library leads to photosynthetic defects, offering insights into how algal …
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Viruses Reprogram Cells into Different Virocells
But if the duck gets infected by a virus so that it no longer looks or quacks like one, is it still a duck? For a … virocells, to better represent how infections occur in natural settings. … A portion of this research was performed … Award (#3790) and an NSF Biological Oceanography award (#1536989) to MBS, University of Michigan discretionary funds …
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High-quality draft genome sequence of Pseudomonas aeruginosa san ai, an environmental isolate resistant to heavy metals
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The Expanding Universe of Methane Metabolisms in Archaea
Methane is a greenhouse gas 20 times more potent than carbon dioxide. Billions of years ago, methane-producing archaea likely played a key role in determining the composition of the Earth’s atmosphere and regulating the global …
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Nigel Mouncey
… private sector, as well as research expertise in secondary metabolites and synthetic biology. Dr. Mouncey has a … Mouncey NJ et al. 2019. New voyages to explore the natural product galaxy. J Ind Microbiol Biotechnol. … for Industrial Microbiology and Biotechnology (2021) 2016 World Bio Markets Bio-based Business Person of the Year …
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Protocols
… by JGI and the JGI user community below for DNA preparation tools, high molecular-weight DNA extraction and RNA preparation.  JGI sample QC protocols can be found here . DNA …
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Rex Malmstrom
… is a Staff Scientist and leader of the Microscale Applications group. Before joining the JGI in 2010, he made the first … photosystem to unicellular marine predators.  PNAS 116 (41), 20574-20583 Couradeau, J.S. et al. 2019. Probing … Genome-wide selective sweeps and gene-specific sweeps in natural bacterial populations. ISME Journal 10 (7), 1589 …
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Decomposing a San Francisco estuary microbiome using long-read metagenomics reveals species- and strain-level dominance from picoeukaryotes to viruses
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