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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… book featuring polar bears in winter scenes that came with crayons in various shades of white. To researchers … viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as DNA viruses, RNA viruses … of Tel Aviv University, one of the project co-leads and first author of the study. Members of the Tel Aviv and NCBI …
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How to Target a Microbial Needle within a Community Haystack
… has developed, tested and deployed a pipeline to first target cells from communities of uncultivated … would allow researchers to focus on specific microbes within metagenome samples and associate their sequences with … worked with researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Expanding Virophage Diversity
Virophages are small viruses with double-stranded DNA genomes that co-infect eukaryotic … Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … rhizosphere, wastewater, and even animal and human (for the first time) gut and taxonomically classified into 27 …
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Tina Clarke
Ms. Clarke joined the Lab in 2007 as the Sr. Human Resources … human and group behaviors as her role in HR evolved with more exposure in employee relations matters and … is very enthusiastic to be a part of the Berkeley Lab’s first Conflict Resolution Services Program and supporting a …
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Tracking the Origins of Methane-Producing Microbes
Chan Zuckerberg Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … of them archaea. The Quake lab had previously collaborated with the JGI on a proposal using this approach through the … observed, but to the “TACK” superphylum,” said study first author Bojk Berghuis. “This provided us with genetic …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
With a new methodology, scientists are now getting more complete … results from single cells. The Science Studying the  genomes of microorganisms is incredibly useful for … in our immediate microbiome. The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
CSP  New Investigator call for proposals.  Tips: Contact us with your questions (jgi-jira[email protected]) Carefully … capabilities, technical feasibility, and relevance to the DOE’s mission.  Have someone proofread your proposal to make … to reach that maximum with broader questions and broader project scope? A: Focus on strong science and …
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An Inside Look at How Plants and Mycorrhizal Fungi Cooperate
… carbon into soil and boosting biofuel feedstocks with less fertilizer. For millions of years, underground … RNA sequencing to understand gene expression: one of the first cross-kingdom spatially-resolved transcriptomics … is a research scientist at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Viruses Reprogram Cells into Different Virocells
… the infected microbial cells as virocells, a change in name first described in 2011 which reflects the metabolic changes … outcomes of these infections can affect the interactions within their ecosystems. Summary Microbes drive the energy … and Environmental Research in one proposed research project. For this project, RNA sequencing was done by the …
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Kjiersten Fagnan
Kjiersten Fagnan began working with JGI in 2012 as a NERSC … biology and bioinformatics approaches in support of meeting DOE mission critical programmatic goals. … Joubert et al., …
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Microbial Genomics & Metagenomics (MGM) Workshop
Registration has closed.  The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is offering a five-day … highly hands-on workshop is designed to familiarize users with the Integrated Microbial Genomes & Microbiomes (IMG/M) data and workflows for computational analysis and interpretation of sequence data. IMG/M is a web-based …
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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
The  National Ecological Observatory Network (NEON) is a network … program. Find out more about the FICUS program at:  jgi.doe.gov/user-programs . Q:  How can I get that NEON … assignable assets program. Q: For a NEON Assignable Assets project, does the data produced become public as well? A:  …
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