Search

… with a flashlight, only able to clearly identify what falls within that single beam. When it comes to microbial … is, they are similar to previously known genes from isolate organisms, but we still aren’t sure of their function.  … marine ecosystems, etc.  “So, they must be doing something interesting or important for that habitat,” Pavlopoulos …

… found inside mitochondria, the energy-producing structures within cells. This is the largest dataset of its kind ever … than 6,000 mitochondrial sequences previously unrecognized within existing public databases and recovered more than … binning (grouping sequencing reads by their likely organism of origin) followed by phylogenomic analysis to …

… key colonization events in the Atlantic ocean occurring within the last 40,000 years. The Impact Eelgrass represents … Population and evolutionary genomics of host–microbiome interactions in Zostera marina and other seagrasses). The …

… extracted from a variety of experimental samples, including organisms (e.g. microbes, fungi, plant), media in which they …

… Monophosphate) is found in nearly all types of bacteria and interacts with cell signaling networks that control many … which can affect pathogenic and symbiotic bacterial interactions with animals and plants, or cause metal … for the E. coli cyclic di-GMP binding protein, Ec YcgR, within the Nano-lantern scaffold. They then mined sequence …

… hazardous waste areas that require cleanup and long-term monitoring. The DOE has been similarly invested in …

… are present in a sample, to generate data about which organisms are active, and which microbes are eating what,  … and participation — is especially important in microbial ecosystems. These communities harbor tens of thousands of … aligned with FAIR principles (Findability, Accessibility, Interoperability, and Reusability) for data reuse.  In the …

… was supported by the Bioenergy Technology Office (BETO) within the Department of Energy’s Office of Energy …

… virus sequences vary widely. In a previous effort, an international consortium recommended specific guidelines and … completeness and removal of contamination from the host organism. As reported in Nature Biotechnology , a team from … flanked on one or both sides by genes from the host organism. With the virus-host boundary clearly defined using …

… (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have both the machinery to make … is that we’re doing work in yeast, a key platform organism that has been used historically for making … lab to provide a seamless transition between the in vivo (within the cell)and in vitro (outside the cell) efforts of …

… — in soil, the sea and, of course, the cells of other organisms. As they infect microbes like bacteria, algae and … invisible to the sampling experiments probing Earth’s ecosystems. Viruses rarely grow well in environmental … was called IMG/VR. It featured samples from different ecosystems all over the world, including 3,908 isolate …

… Matt is broadly interested in the interactions between microbial life and environment, and … considered to be inhospitable to humans are of particular interest. Matt also supports various CSP and FICUS user …