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JGI@25: Solving the Mystery of the Missing Oil
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … Over the next decade, the JGI’s single cell genomics and metagenomics capabilities were harnessed in several Lab …
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2024 Progress Report
… for a sustainable bioeconomy. Mission  As a U.S. Department of Energy Office of Science user facility, we provide advanced genomic …
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JGI Early Career Researchers Featured in mSystems Special Issue
In a special issue of mSystems , out May 14, 2019, JGI researchers are among the authors who offer perspectives on what the next five years of innovation … beyond the tried-and-true method of traditional shotgun metagenomics. One approach uses fluorescence-activated cell …
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Trent Northen
… to link genomes with environments to understand how webs of microbes cycle carbon and sustain biomes via the development and application of advanced mass spectrometry approaches and model … Schadt, C., Martin, S., Carrell, A. et al. An integrated metagenomic, metabolomic and transcriptomic survey of …
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JGI@25: A Single Cell, Myriad Microbial Discoveries
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … of the tree of life. Used in tandem over the years, metagenomics and single cell genomics have afforded JGI …
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An Integrated Dataset to Understand Ecosystem Interaction
… data set will help identify how different elements of the ecosystem interact and respond to changes in the … their genetic diversity. They hold economic value as both biofuel feedstock and their role in carbon sequestration. … managed through human intervention. By leveraging metagenomics, scientists were able to analyze the DNA of …
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Fungal Friends or Foes in Plant Roots
… host health. The Science Researchers compared the genomes of fungi that colonize Arabidopsis thaliana roots with … friends or foes. The Impact Microbial communities comprised of fungi and bacteria can thrive in plant roots. They play … of the key community participants and enabling future metagenomics studies.   … The sequencing project was funded …
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
The Science Within the archaeal domain, there is a group of tiny hitchhikers. These organisms are abundant and yet … mini genomes to match. As a result, they cannot process all of the chemicals they need to survive. To fill in their … symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these relationships.  …
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Three Join the JGI User Executive Committee
… three new members earlier this month – Sneha Couvilion of Pacific Northwest National Laboratory, Chris Schadt of Oak Ridge National Laboratory and Elizabeth “Lizzy” … CSP and the JGI-EMSL FICUS programs and brings expertise in metagenomics and novel applications for long-read DNA …
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JGI@25: Using Team Science to Build Communities Around Data
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and … for an encyclopedia of reference genomes for fungal metagenomics. Two more CSP proposals came in 2016 that would …
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Axel Visel
Programs, he focuses on the development and implementation of strategic initiatives at the JGI. Dr. Visel received his … methods for elucidating the gene regulatory landscape of vertebrate genomes, which led to the discovery of … LA, Tringe SG, Visel A , Woyke T, Wang Z, Rubin EM (2011). Metagenomic discovery of biomass-degrading genes and genomes …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley … (“contigs”) from thousands of ecologically diverse metagenomics samples. The work is supported by NIH Common …
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