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Mike Sneddon
… Dr. Sneddon is the Advanced Analysis Group Lead in the Data Science and Informatics Department at the Joint Genome … and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled … clinical cancer diagnostics company, where he led the Production Informatics team in delivering validated …
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A More Intuitive Phytozome Interface
… Highlighting the latest interactive version of the JGI’s plant data portal. On … Phytozome, with a more intuitive interface, deployed on much more maintainable software and hardware infrastructure. … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Sequencing the Genomes of the First Terrestrial Fungal Lineages: What Have We Learned?
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Integrating chromatin conformation information in a self-supervised learning model improves metagenome binning
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De novo transcriptome assembly of drought tolerant CAM plants, Agave deserti and Agave tequilana
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Diel rewiring and positive selection of ancient plant proteins enabled evolution of CAM photosynthesis in Agave
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High-quality permanent draft genome sequence of the Mimosa asperata - nodulating Cupriavidus sp. strain AMP6
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in what cultivation can’t. The Science At … matching these viral genetic sequences to their hosts is crucial to understanding what these viruses can do. Building … together into the same workflow, then uses a machine-learning model to give its integrated prediction a confidence …
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Year in Review: JGI’s 2018 Progress Report Available Now
… The latest edition of the JGI Progress Report highlights notable … lake east of California’s Yosemite National Park, taken by JGI’s own Jon Bertsch. Microbes isolated from Mono Lake were …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Making a Lichen Together
… Science The humble lichen is a superorganism: one being that is actually comprised of two (or more) participants. One … branches of fungi); another is a photosynthetic microbe, tucked in the fungus’ tissue. If you’re a Marvel Comics fan, … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility. Grigoriev and …
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Natural soil microbes alter flowering phenology and the intensity of selection on flowering time in a wild Arabidopsis relative
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