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Game On: High School Students Drive Everglades Metagenomics Study
… In late June, Kathleen Lail, a member of JGI’s Sample Management … Group, attended a conference in Florida to discuss a JGI pilot project involving soil sampling in the Florida … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… show methanogenesis is not exclusively for Euryarchaeota. Atmospheric levels of methane, a potent greenhouse gas, … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … of methanogenesis, with metagenomic support from the JGI. First they were able to identify the potential for …
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Expanding Virophage Diversity
… are small viruses with double-stranded DNA genomes that co-infect eukaryotic cells along with giant viruses. … the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science facility, have increased the … more than 14,000 publicly available metagenomic datasets in JGI’s  Integrated Microbial Genomes & Microbiomes (IMG/M) …
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Tracing the Evolution of Shiitake Mushrooms
… often source their nutrients — the shii tree, a Japanese relative of the oak. These fungi are part of the … and Antarctica. A  new analysis takes a  genomic look at Lentinula samples from around the world. By complete … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Gene Expression: From On-Off Switch to Dial
… library approach to tuning gene expression in metabolic pathways. Compared to the traditional way, which leverages an … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… JGI researchers lend expertise to develop tools and data hub for NIH program. While the microbes in, on and … impact the regulation of global nutrient cycles. The JGI’s latest strategic plan (download a copy  here ) … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… A group led by JGI scientists have made strides in improving and applying a method that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  announced in  Nature …
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Complete Genome of Serratia sp. Strain FGI 94, a Strain Associated with Leaf-Cutter Ant Fungus Gardens
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Complete Genome of Enterobacteriaceae Bacterium Strain FGI 57, a Strain Associated with Leaf-Cutter Ant Fungus Gardens
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Learning to Look
… readers need to look for a number of distinguishing features. Several characters may be spotted with a striped … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an … viruses,” said the study’s lead author Simon Roux, a JGI research scientist in the  Environmental Genomics group …
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How Filamentous Fungi Sense Food
… Tracing gene regulatory networks in the model fungus  Neurospora crassa . The … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … (Berkeley Lab). The work was enabled in part through JGI’s Community Science Program through a proposal akin to …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the samples we analyzed.” Emiley Eloe-Fadrosh, head of the  JGI Metagenome Program and senior author on the study …
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