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Hiroshi Otani
… and implementing new technologies and methodologies that facilitate discovery of new secondary metabolites. Prior to joining the JGI, he studied transcriptional regulation, metabolism and …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
… is through a method called Multiple Displacement Amplification, and most genomes that were acquired through it were … The U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … their analysis goals. Offering this tool establishes the JGI as a leader in single-cell genomic amplification at a …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of the Microbiome Data Prize by the American …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that transposable elements (TEs) contributed to in the grass …
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A Complex Confection Decoded: Sugarcane Reference Genome
… for the sugarcane cultivar R570 has been  published in  Nature by an international consortium. With the genetic code … The Impact In providing a reference sugarcane  genome , the JGI provides foundational genetic information that crop … .   … The work (proposal: https://doi.org/10.46936/10.25585/60001084 and …
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Dan Rokhsar
DOE Joint Genome Institute in 2000 as the founding Associate Director for Computational Genomics, and led the … over fifty plant and animal genomes. He currently leads the JGI’s Computational Genomics group, and is past lead of the Eukaryotic Genome Program (2010-2019), and JGI Chief Informatics Officer (2013-2016). Dr. Rokhsar …
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Alabama A&M Interns Access An Abundance of Knowledge
… an internship program to bring students to the JGI for research training experience. Enabled by the DOE RENEW initiative, undergraduate student Ti’Yanna Watson and graduate student LaMonika Dent worked with JGI mentors Yi Zhai and John Vogel on researching the …
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Biotech Partners Summer Intern Co-Authors NAR Paper
… one of five Antioch High School rising juniors who participated in internships at the DOE Joint Genome Institute this … the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s … a video about the Biotech Partner summer interns at the JGI. What did you do for your summer vacation? …
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Uri Neri
Uri Neri is a computational biologist who spends his days wrangling viral … genomes and occasionally remembering to document his code. At JGI, he develops tools for viral discovery and analysis, …
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Cultivating Symbiotic Antarctic Microbes
… and ‘omics techniques to experimentally determine that Nanohaloarchaeota are symbionts, rather than free-living … and the biosphere), including the global carbon cycle. The JGI is sequencing large numbers of microbes and microbial … superphylum of extremophilic archaea first outlined by JGI scientists and their collaborators in 2013. While most …
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At the Forefront of Terrestrial Virus Research
Gary Trubl is finishing his PhD in Microbiology at The Ohio State University, co-advised by Drs. Virginia Rich and Matthew Sullivan. He shared a few thoughts on his summer at JGI through a program that provides graduate thesis research …
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How Microbes Can Protect Plants in Drier Straits
A mini-episode looking at the efforts of Pankaj Trivedi, whose New Investigator proposal was recently approved through the JGI Community Science Program, to use microbiome science to …
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