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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … river microbiome datasets are also available through the DOE Systems Biology Knowledgebase, allowing researchers to … could work across platforms. … This work was partially supported by awards from US Department of Energy (DOE) Office …
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Building Sphagnum Genomic Resources
Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on carbon … establishment and maintenance is supported by the US DOE, Office of Science, Office of Biological and …
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The More the Merrier: Making the Case for Plant Pan-genomes
… three or more genome copies from additional parents or duplication, also known as “polyploidy,” is common among … plants; at least once during their evolution, the genomes of flowering plants multiply. Over time, plants lose many … Universidad de Zaragoza and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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A Step Toward Controlling Soybean Rust
… causes Asian Soybean Rust (ASR) and is the major pathogen of soybean. Left uncontrolled, soybean rust could reduce crop yields by as much as 90 percent. As part of the DOE Joint Genome Institute’s  2016 Community Science Program portfolio , Sebastien Duplessis of the French National Institute for Agricultural …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science … mushrooms are white rot fungi, belonging to an elite group of decomposers that can break down all of wood’s … Science Program (CSP) at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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FinisherSC: a repeat-aware tool for upgrading de novo assembly using long reads
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Refining the Process of Identifying Algae Biotechnology Candidates
… well ] The Science The recipe for growing algae as a source of sustainable biofuels seems fairly simple: place these … involving researchers at the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science … bioproducts. At NREL, Luke Dahlin in Michael Guarnieri’s group led the effort to screen 107 algal strains, growing them …
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Genome Insider
Genome Insider is a podcast that showcases the work of JGI collaborators in brief forays, connecting audiences with … research to better understand — and harness — the superpowers encoded in plants, fungi, microalgae, …
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VEGA Symposium
Hosted by the JGI and co-organized with NIST,  the goal of the Viral … and characterize uncultivated viruses, understand the role of viruses in natural ecosystems, and functionally explore …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
On July 30, UC Merced students and their JGI mentors toasted to the end of a nine-week virtual internship. The celebration was … due to the COVID-19 pandemic. As a result, mentors set up weekly, or in some cases daily, check-ins with their …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … cell’s membrane. Two decades ago, a team discovered a group of viruses that had in their genomes a surprising tool: a … a team led by scientists at the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science …
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Virus-Microbe Interactions of Mud Island Mangroves
… a graduate student in Brett Baker’s lab at the University of Texas at Austin, will defend his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science Graduate Student Research (SCGSR) … by Susannah Tringe, head of the Microbial Systems group. He also worked with Simon Roux and David Paez-Espino. …
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