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Who We Are
…   The U.S. Department of Energy (DOE) Joint Genome Institute (JGI) is a … science and collaboration with partner organizations such as the DOE Systems Biology Knowledgebase and the National Microbiome …
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Tracing the Evolution of Shiitake Mushrooms
New genomes highlight the diversity of white rot fungi in the genus Lentinula   The Science Shiitake mushrooms get their name from the … By complete sequencing of 24 new mushroom genomes, and assembling genomes from 60 existing sequences, this work …
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Natural Prodcast Episode 20: Brian Bachmann
… … DAN UDWARY: Hey everyone and welcome back to a new session of Natural Prodcast. I’ve got two things I wanted to tell you about in this … and using engineered biosynthetic pathways and enzyme systems to do synthetic analoging of some really complex …
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JGI@25: The Little Alga That Could
In honor of the JGI's 25th anniversary in 2022, we have revisited a number of notable achievements that showcase our collaborations and capabilities to enable great … for studying photosynthesis and cell motility. It’s also a model for studying lipid production in other algae that may …
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Getting to the Bottom of Fungal Functions Across Earth’s Forests
Across four forests, researchers have leveraged data from … the sound — one thing is for sure: there are lots of fungi around. Within a forest’s soil, hundreds of species … to tree health and carbon storage — skills that matter increasingly as the climate warms. However, these are complicated …
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Notes on the Microbial Diversity of Puerto Nuevo’s Coastline
Puerto Nuevo is a small town along the Baja California coastline in Mexico. … is on cone snails, C. californicus in particular, as a model system for venom-microbe interactions. Cone snail …
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Boosting Small Molecule Production in Super “Soup”
Do metabolic pathways from engineered yeasts still work in … but then moves out of the cell structure into a cell-free system. The work complements efforts to further develop …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the … transposable elements (TEs) contributed to in the grass model species Brachypodium hybridum . …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to classify gene families. The Science As a proof of concept, … genomes of Dothideomycetes, the largest class of fungi, by lifestyles. The machine “learned” to identify data …
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New Vision, New Mission, New Plan: The JGI’s Next Five Years
New 5-year strategic plan outlines how the JGI will advance the … Department of Energy (DOE) Joint Genome Institute (JGI) has released its newest 5-Year Strategic Plan: Innovating … along multiple avenues, including agriculture, climate modeling, novel bioproducts, and environmental …
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Partners
The JGI leverages its existing partnerships and develops others providing … complementary expertise to advance the science and serve as impact multipliers . The JGI has a long-term partnership … Center (NERSC) and data infrastructure projects—the DOE Systems Biology Knowledgebase (KBase) and the National …
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Microbiome Data Science Team
Biology is currently experiencing a revolution brought on by rapid developments in genomics … important biotechnological applications (e.g., new CRISPR-Cas variants and new CRISPR-Cas types) (Nature Communications … viruses with an expanded complement of translation system components.  Science  356: 82-85 Ovchinnikov S. et …
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