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Taking Stock of the Known and Unknown Microbial Space
Metagenomic datasets could help map out microbial diversity hotspots … biodiversity. Using publicly available genome sequence data generated over the past three decades, their study … the Functional Annotation team within the JGI’s Microbiome Data Science group. “Turns out that despite all the genomes …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… metagenomics to identify over 27,000 microbial genes. The data from that study is now used across California State …
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Calculating the Costs of Multiple Switchgrass Gene Copies
… by our new switchgrass manuscript , we plan to use existing data as well as generating additional genomic resources to address long-standing evolutionary ecological … a key role in this response. Generating additional genomic resources for the 8X will provide a rare opportunity to …
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Jinghua Jenny Huang
… of large amount isolate genomic and metagenomic data stored in Oracle databases, Berkeley DB and files in various formats. …
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JGI Workshop at SIMB NP Meeting
… hosts, availability of sequenced genomes, and computing resources needed to predict BGCs from available genome …
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JGI@25 RECAP: 2022 Annual Meeting features historical perspectives on JGI’s 25 years
… in his 25th Anniversary presentation. “Those driven by new tools and those driven by new concepts.” Patrinos went on to … be junk DNA, so there was quite a bit of resistance to use resources to sequence it,” Patrinos said. After many more … one second. “It isn’t just the generation of vast troves of data, it’s the new areas of scientific possibility that …
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Marcel Huntemann
… metagenomes. He also works on automating intra-department data exchange and assists with large scale computations on …
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Access to Rock Star Scientists
… in STEM. Everyone is so happy to know you and provide all resources to excel in your project.”     Vicente Ramirez, UC … helpfulness and patience of my JGI PIs, having lots of data to play around with.” …
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The Expanding Universe of Methane Metabolisms in Archaea
… the Integrated Microbial Genomes & Microbiomes (IMG/M) database maintained by the U.S. Department of Energy (DOE) … of Science User Facility, for publicly available metagenome data provided by the other study co-authors, and … datasets from a variety of environments, as well as tools for analysis. “There is evidence that methanogenesis …
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Toasting to the 2020 JGI-UC Merced Summer Internship Program
… opportunity to learn valuable professional skills like time management and presentation skills.  “This program is so …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… team mined more than 8,500 publicly available metagenome datasets generated from sampling sites around the world, including data from several DOE-mission relevant proposals through … their unicellular hosts,” Schulz added. The work also used resources of the  National Energy Research Scientific …
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