Search

… , Susannah Tringe , and Tanja Woyke  were part of a “big data” mining effort reported in  Nature Biotechnology that … from environmental samples around the world. Much of the data had been generated from samples provided by more than …

… it makes its sequencing, synthesis, metabolomics and data analyses capabilities available on a peer-reviewed … being used to integrate the metabolomics and transcriptomic data? A:  We use MAGI. Reference: Erbiligin et al.  MAGI: A … Epub 2019 Apr 4. Q:  Any advice on normalizing metabolomic data from a whole microbial community, without having cell …

… and analysis of Mobile Genetic Elements from Metagenomic Data.  Mateus’s GitHub …

… Phakopsora pachyrhizi on MycoCosm Data Portal …

… quality genome assemblies for all three grasses. With these datasets, researchers made a pan-genome containing four  B. … Brachypodium distachyon on Phytozome Data Portal …

… office building, its roots are akin to the ground floor lobby. People walking into the lobby have many reasons for … isolates from the collection. The team then compared this dataset against nearly 80 previously published fungal genomes on the JGI data portal MycoCosm . They looked for genes known to be …

… — mainly actinobacteria, as well as proteobacteria, bacteroidata, and patescibacteria. A major strength of this kind of … Leotiomycetes and Coniochaeata lignaria on MycoCosm Data portal … Datasets …

… HAL2 and FIL2 genomes on Phytozome Data portal … Datasets …

… platform for tracking JGI's sequencing projects and data warehousing. This platform streamlines project … Management Systems (LIMS), bioinformatics, and genomics data management. He has worked at several renowned … solutions for large-scale sequencing projects and data analysis pipelines.  …

… samples in a single experiment — and integrated these data with single-cell gene expression maps. Together, the scale of data enabled by these approaches creates a vast resource … stricter filtering criteria provides a robust community dataset of improved quality; deep insights identify the most …

… so now here at the JGI, I work with all of the sequencing data that the JGI produces to try to find and identify … and to do research to get a better understanding of that data. ALISON: Awesome. So tell me why should I even care … I kind of see it. DAN: So what we’ve got here is, I just grabbed a photo of a “biochemical pathways” chart. So if you …