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How Filamentous Fungi Sense Food
Tracing gene regulatory networks in the model fungus  Neurospora … a wide array of plant cell-wall degrading enzymes (PCWDEs) that allow them to efficiently break down the wide … sources, these fungi detect which complex chains are available; this information triggers pathways to determine which …
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Computationally Classifying Fungal Lifestyles
Machine learning methods were applied on sequenced fungal genomes to … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab), has generated a more accurate phylogenetic tree …
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Uncovering Novel Genomes from Earth’s Microbiomes
… for multiple applications.       Despite advances in sequencing technologies and computational methods in the … diversity. Because most microbes cannot be cultivated under laboratory conditions, their genomes can’t be sequenced … in the physical sciences in the United States, and is working to address some of the most pressing challenges of …
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Targeted Switchgrass BAC Library Screening and Sequence Analysis Identifies Predicted Biomass and Stress Response-Related Genes
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Microsatellite discovery from BAC end sequences and genetic mapping to anchor the soybean physical and genetic maps
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Better Genome Editing for Bioenergy
… part of CRISPR-Cas9 technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput gene-editing tool that can help scientists engineer organisms for bioenergy applications. Cas9 needs guide …
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JGI Launches Latest Strategic Plan
For the Joint Genome Institute, the end of 2018 was marked by a … new home of the JGI and KBase in the heart of the Lab’s 200-acre campus—with the big move from leased space in … We encourage you to read through it, provide us feedback and to help us calibrate progress toward our near- and …
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Complete genome sequence of Deinococcus maricopensis type strain (LB-34T)
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
Meta-omics datasets show that CRISPR-Cas systems determine mutualism or parasitism between some archaeal hosts and their hitchhikers. The Science Within the archaeal domain, there is a group of tiny … these symbiotic interactions are difficult to study in the lab. Metagenomics provides new views of these …
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Fungal Friends or Foes in Plant Roots
Uncovering associations between plant roots and fungi that can help … learn more about these other plant-fungal relationships, an international team led by graduate student Fantin Mesny in … Science User Facility located at Lawrence Berkeley National Laboratory (Berkeley Lab). Their findings were described in …
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Supercharging SIP in the Fungal Hyphosphere
High-throughput stable isotope probing helps ID novel interactions between bacteria and fungi The Science … stable isotope probing (SIP) proved to vastly reduce labor and improve results. Applying this method to the study …
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The JGI announces FY25 awardees for our Community Science Program Annual Call
… 2025 Community Science Program Annual Call. These projects include cutting-edge research into microbial communities — … estuaries reshaped by dam removal to Antarctica’s photosynthetic mats — to reveal how these systems adapt and … these projects are large in scale and involve multiple collaborators, bringing together diverse expertise to address …
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