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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… expands the global diversity of large and giant viruses. While the microbes in a single drop of water could … they are found everywhere, comparatively little is known about viruses, much less those considered large and giant. … filter the data for the major capsid protein (MCP) to identify NCLDV viruses. JGI researchers previously applied this …
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JGI Earth Month: Healthy Streams, Nutritious Microbes?
… the world’s rivers and their microbial communities. He’s focusing on the Arkansas River and how microbes might be influencing its health.  He sat down with me to talk about his project, and riffed a bit on what it means in a … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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Finding the Fermenters
… of fermentative prokaryotes. The Science Most organisms use oxygen to convert food into energy. However, in … and Environmental Research (BER) program to enable scientific discovery in support of the DOE mission. Fermentative … used the JGI’s GOLD and IMG data portals to get information about the genomes and genes of the organisms on the list. …
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Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche
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Metagenomics-resolved genomics provides novel insights into chitin turnover, metabolic specialization, and niche partitioning in the octocoral microbiome
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For the Tiniest Archaea, A Genomic Switch of Friend or Foe
… they need to survive. To fill in their nutrient gaps, they must latch onto a larger host — often, a fellow archaeal … cycling across the planet. Summary To understand more about how archaeal hosts and hitchhikers coexist, … Berkeley National Laboratory’s Sustainable Systems Scientific Focus Area funded by the US Department of Energy …
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You Can Move, But You Can’t Hide
… at the JGI develop a tool to quickly and accurately identify mobile genetic elements like plasmids and viruses. The Science Mobile genetic elements (MGEs) are genetic … biogeochemical cycles around them. By understanding more about the genomics of MGEs and their evolution at the …
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The Case for Conservation
… crop yields.  The Science The fire moss Ceratodon purpureus is a short plant with a complex genome . Now, … answer is in sight for a similar question. In a recent Scientific Advances article , a team led by McDaniel and his … HudsonAlpha. As the team discussed in a JGI podcast episode about the work, the effort to fully sequence the fire moss …
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When “The Blob” Made It Hotter Under the Water
… began in late 2013, when a large patch of warm ocean water about a third the size of the United States began forming in … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … … This work was performed under the auspices of the Scientific Committee on Oceanographic Research (SCOR), the US …
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Fungal Friends or Foes in Plant Roots
… from other plant-associated fungi. Their analysis identified fungal gene families that help determine if these … fungi can form such symbiotic partnerships. To learn more about these other plant-fungal relationships, an … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National …
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Polar Phytoplankton Need Zinc to Cope with the Cold
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … Science Program (CSP) .  Through this collaboration, in 2017, they published the first genome sequence of a … and computational analysis that enable systems-based scientific approaches to these challenges.  DOE’s Office of …
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JGI@25: Strengthening Soybean
University of Missouri said he and his colleagues had identified 1,110 genes involved in lipid metabolism.  “There’s … the JGI has also helped researchers understand a fungus that threatens these crops as they grow. Asian Soybean … ASR can decimate up to 60-90% of its yield.  (Learn more about the soybean genome sequence and ASR in this JGIota, a …
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