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Learning to Look
… Machine learning approach significantly expands inovirus diversity. To answer the question, “Where’s Waldo?” … will have all of these features. As described July 22, 2019, in  Nature Microbiology , a team led by scientists at … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… and what escapes to the atmosphere in the form of greenhouse gases (e.g., carbon dioxide, methane, and nitrous … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … than expected. The transcriptome data had suggested about a 50/50 split between fungal and bacterial enzymes. …
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Forming Scientific Connections and Building Community
… The 11th cohort of JGI-UC Merced interns pick highlights from their summer … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, hosted three undergraduates and seven … Watch the short video here to see what they had to say about their experiences and what they’ll take with them as …
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An Enzyme System to Help Catalyze Bioproduction of Plastic
… reductase system, researchers could open avenues for using bacteria to produce ethylene and more.  Microbes excel … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … contexts.  “That allows us now to really start thinking about the structure-function relationship. What could we do, …
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JGIota: Looking Back at Methane-Making Microbes
… from gut microbes — the bacteria and archaea breaking down plant matter. So since 2010, the JGI has supported researchers studying those microbial methane-makers. Eventually, that could help us dial back their emissions, while still producing things …
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A Grass Model to Help Improve Giant Miscanthus
… Miscanthus  sequence offers insights into benefits of polyploidy and … miscanthus often appear in discussions of rapidly growing plants whose biomass can be renewably converted into energy … Biosciences Institute, the DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Gene Expression: From On-Off Switch to Dial
… approach to expression, scientists can now opt for various shades of grey. The ability to fine-tune the level of … systems, expanding the technologies available for other JGI users outside the realm of bioenergy optimization. Summary Life is all about balance. This study,  recently published in the  …
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JGIota: Looking Back at Sequencing for Soybeans
… could boost biofuels and fertilize fields. So in 2010, the JGI helped publish the original genome sequence for the … able to look into soybean’s strengths – along with a fungus that threatens this important crop. Hear more about that work from researchers Gary Stacey (University of …
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Computational Strategies for Scalable Genomics Analysis
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Biotech Partners Summer Intern Co-Authors NAR Paper
… Kaushal Sharma, one of five Antioch High School rising juniors … the Genomes OnLine Database (GOLD) administered by the DOE JGI. T.B.K Reddy, Kaushal‘s mentor, described his student’s … tasks we assigned.”       Click here to watch a video about the Biotech Partner summer interns at the JGI. What …
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Uncovering Novel Genomes from Earth’s Microbiomes
… analysis leads to identification of biosynthetic gene clusters for novel secondary metabolites for multiple … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … she said. Listen to study co-author Dan Udwary talk about genome mining using the GEM catalog in  this episode …
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Meeting Report: “Metagenomics, Metadata and Meta-analysis” (M3) Workshop at the Pacific Symposium on Biocomputing 2010
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