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GNPS Dashboard: collaborative exploration of mass spectrometry data in the web browser
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Best practices for the execution, analysis, and data storage of plant single-cell/nucleus transcriptomics
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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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Cataloging the Microbes that Manage the Health of River Systems
… on river microbes in 90% of US continental watersheds. The Science In a recent Nature paper , researchers describe a … of watershed ecosystems, where rain or snow drain into such bodies of water before heading out to bays and … systems, these communities remain understudied. Through the JGI’s Community Science Program, Colorado State University …
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Marchantia Pangenome Highlights Adaptive Nature of Plant Lineages
… genetic toolkit of ancestral and present-day plants The Science In a recent  Nature Genetics paper , researchers … Commonly known as liverwort, this was done to gain insights into gene families involved in adaptations seen in later … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Sequencing and functional validation of the JGI Brachypodium distachyon T‐DNA collection
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Len Pennacchio
… Len Pennacchio is the JGI's Deputy of Genomic Technologies. oClick to learn more about the offerings and capabilities we offer JGI users to help advance their science. … The Deputy of Genomic Technologies serves as the JGI’s primary point of contact for all High-Throughput Data …
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Here, There and Everywhere: Large and Giant Viruses Abound Globally
… JGI-led team significantly expands the global diversity of … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … large and giant viruses offered the researchers insights into how they might interact with their hosts, and how those …
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2024 Progress Report
… (IGB) seen above is home to the DOE Joint Genome Institute (JGI). Researchers from the DOE Systems Biology Knowledgebase (KBase), the National Microbiome Data Collaborative (NMDC), and Berkeley Lab Biosciences Area are also co-located in the IGB. Vision  Lead …
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Rare earth element alcohol dehydrogenases widely occur among globally distributed, numerically abundant and environmentally important microbes
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A Genomic Perspective Across Earth’s Microbiomes Reveals That Genome Size in Archaea and Bacteria Is Linked to Ecosystem Type and Trophic Strategy
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SoyCSN: Soybean context‐specific network analysis and prediction based on tissue‐specific transcriptome data
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