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Learning to Look
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility, developed an … viruses,” said the study’s lead author Simon Roux, a JGI research scientist in the  Environmental Genomics group … and environmental characterization and cleanup. The JGI provides integrated high-throughput sequencing and …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… of meta-analyses boosted by AI and Machine Learning — JGI researchers and collaborators work to create FAIR … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … to compare?” said Malmstrom, who worked with JGI Metagenome Program head Emiley Eloe-Fadrosh to host researchers in …
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Genome assembly and annotation of microalga Nannochloropsis oceanica C018.
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A New Actinobacterial Chapter in the Genomic Encyclopedia of Bacteria and Archaea
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Natalia Ivanova, senior author of the study and head of the JGI’s Microbiome Annotation Group. Many of these bacterial … sequences have been generated using techniques that the JGI has pioneered, including single-cell genomics and …
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From Competition to Cooperation
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the fungal genomes used in the study are available on the JGI fungal portal  MycoCosm . The work builds upon several … Interfaces Scientific Focus Area in the Genomic Science Program, the Office of Biological and Environmental Research …
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Effects of Polar Light Cycle on Microbial Food Web
Ace Lake were collected over a 10-year period and sent to JGI for metagenomic sequencing. A study  recently published … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … Lab). The work was enabled by the JGI’s Community Science Program. For most months each year, Ace Lake is covered in …
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From Stress to Growth: The adaptive mechanisms of algae in changing Arctic waters
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … ( The annotated algal genome is available on the JGI’s PhycoCosm data portal.) This research not only sheds … Engineering Research Council of Canada (NSERC) Discovery program grants to C.L. Support from the Canada First …
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Tracking the Origins of Methane-Producing Microbes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the … archaea. The Quake lab had previously collaborated with the JGI on a proposal using this approach through the Emerging Technologies Opportunity Program (ETOP). Following that work, they partnered once …
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SPRUCE-ing Up Science
A former JGI intern is now applying his internship lessons on … students to participate in the DOE Joint Genome Institute (JGI)-UC Merced internship program, Lawrence is now a postdoctoral researcher at the …
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Doubling Down on Known Protein Families
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … proteins with massively parallel computations.”  Guided by JGI scientists, the team embarked on a mission to unveil the … Nikos Kyrpides , senior author of the study and head of the JGI’s  Microbiome Data Science group . Shining a Light on …
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The More the Merrier: Making the Case for Plant Pan-genomes
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … genomically the whole complex of progenitors and descendant species and, consequently, the evolution of … the study, partly enabled by the JGI’s  Community Science Program , the team generated reference genomes for  B. …
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … are even less known than DNA viruses,” said Simon Roux , a JGI scientist and one of the project co-leads. “But same as … team, the computational work that led to the uncovered abundance of RNA viruses is just the beginning. “I often say …
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