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Sharing Structure and Function in Biological Design with SBOL 2.0
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Extent and Origins of Functional Diversity in a Subfamily of Glycoside Hydrolases
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Structures and function of the amino acid polymerase cyanophycin synthetase
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Ecology and evolution of viruses infecting uncultivated SUP05 bacteria as revealed by single-cell- and meta-genomics
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Cataloging the Microbes that Manage the Health of River Systems
Database provides details on river microbes in 90% of US continental watersheds. The Science In a recent Nature … program at Pacific Northwest National Laboratory. The JGI sequenced over 1,000 metagenomes and established standardized sequencing …
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JGI Scientists Pen Genome Watch Articles
Institute in the UK — a nonprofit that was founded to help sequence the human genome. Today, the Sanger Institute … hot topics in genomics.” And it makes sense to Woyke why JGI would have this role. “We work with leaders in … characterizing the human microbiome  by its genomes and metagenome , rather than just by 16S ribosomal RNA gene …
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An Automated Tool for Assessing Virus Data Quality
CheckV can help researchers assess virus sequence fragments and data quality. The Science Through … being recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … limits the ability of researchers to accurately perform functional assessment, host prediction, and phylogenetic …
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A Natural Mechanism Can Turbocharge Viral Evolution
Understanding how a fundamental mechanism of evolution allows microbes to adapt to changing … to adapt to changing environments. It also sheds light on why the rapid injection of mutations in a particular gene … sampled all at once from the same environment, called metagenomes. Why? Simon Roux, who led the research team and …
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High-resolution phylogenetic microbial community profiling
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From Sample Shipments to Sequences – A Tour of the JGI’s Sequencing Pipeline
Every year, the JGI sequences around 35,000 samples — from plants, algae, … viruses — to support scientists around the world. Most of those researchers send their samples in from afar, … with names — but not doors — and robots handle a bunch of benchwork. …
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Genome Calligrapher: A Web Tool for Refactoring Bacterial Genome Sequences for de Novo DNA Synthesis
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Building on basic metagenomics with complementary technologies
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