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Characterizing Communities: JGI Announces Latest CSP Portfolio
… proposals have been accepted from 70 full submissions based on 92 letters of intent. Additionally, 40 percent … Susannah Tringe, JGI User Programs Deputy. “These new CSP projects accelerate our efforts to characterize … same mistakes,” he said. “Although in my specific case the projects are different for the two proposals, I can see the …
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The Megadata of Lake Mendota - Part 1: Many, Many Mers
Lake Mendota sits right next to the University of Wisconsin, Madison. And Trina McMahon's lab has been sampling the microbes … they set out to analyze 500 metagenomes, it was the biggest project the JGI had ever put together.  The next 3 episodes …
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Better Genome Editing for Bioenergy
… technology to enable improvements in microbial oil production. The Science CRISPR-Cas9 is a powerful, high-throughput … at a genetic level, how does  Y. lipolytica work? The project was a multi-institutional effort led by … four genes, including one with no prior known function. The project’s success demonstrates how to sharpen the …
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Adopt-A-Genome
… (California State San Marcos) about how the Adopt-A-Genome project got started. Plus, Kalyani Maitra (California State Fresno) and two students, Angela and Mark Soghomonian share what it was like to take on one of these genomes.  …
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A Redesign for Yeast’s Genome, Chromosome by Chromosome
… genomes in general, Jef Boeke, Weimin Zhang (NYU Langone Health) and Leslie Mitchell (Neochromosome) have worked … to replace yeast’s native chromosomes with synthetic versions. This project has turned out to be an international collaboration, …
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Simon Roux Named 2025 ASM Microbiome Data Prize Awardee
Congratulations to US Department of Energy (DOE) Joint Genome Institute (JGI) staff scientist Simon Roux , who was recently selected as the 2025 recipient of … as part of the Early Career Research Program (ECRP). His project, “Characterizing Virus-Driven Alterations of …
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From Intern to Published Scientist: The Journey of a JGI-UC Merced Intern
For many scientists, the culmination of their work into a written report that is published in … the primary author on this publication and drove the entire project, Visel explained. She continued working virtually … Practical Applications for Fungi Wint began working on the project that culminated in this publication during her …
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Virus-Microbe Interactions of Mud Island Mangroves
University of Texas at Austin, will defend his dissertation. Some of his research was conducted at the JGI through the DOE Office of Science … wetlands in south Texas,” he explained. “In terms of my project, I wanted to incorporate that CSP, but also look at …
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Gotta Catch 'Em Gall
In this episode, hear from Kasey and Patrick about how this project unfolded, and how they worked with the JGI's …
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Viruses Reprogram Cells into Different Virocells
But if the duck gets infected by a virus so that it no longer looks or quacks like one, is it still a duck? For a … and Environmental Research in one proposed research project. For this project, RNA sequencing was done by the JGI, and proteomics …
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A Revamped Amplification Method that Enables Nearly Complete Single-Cell Genomes
DNA for genome sequencing was no easy task. The traditional way of collecting them is through a method called Multiple Displacement Amplification, and most genomes that were acquired through it were … the cell breaks apart and its DNA is copied millions of times using a method named Multiple Displacement …
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Access to Rock Star Scientists
Cole, Mo Kaze, Akshay Paropkari, Vicente Ramirez and Rhondene Wint had summer 2018 internships in Walnut Creek. The … by passionate scientists working on interdisciplinary projects. I feel inspired to pursue a career in STEM. … to know you and provide all resources to excel in your project.”     Vicente Ramirez, UC Merced JGI Mentor: Albert …
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