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JGI@25: Fueling Investigation into Methane-Making Microbes
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … Hungate1000, a catalog of 410 rumen microbe genomes. The project relied upon resources from laboratories around the … provide colleagues at the Salk Institute with genomic DNA samples from Ruminococcus flavefaciens (XPD3002). With that …
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Understanding Wildfire Recovery, Starting in Soil
… begins at the forest floor. Within the soil, a microbiome of bacteria, viruses and fungi process carbon and nitrogen, … Institute (JGI). EMSL and the JGI are DOE Office of Science User Facilities located at Pacific Northwest National … DOE Office of Science National User Facilities in a single project. …
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JGI Announces 2026 New Investigator Portfolio
… Kumar Gautam, Gareth Gillard, Audrey Goeckner, Jennifer Goff, Sarah Gonzalez Henao, Yang Hai, Julia G. Harenčár, … N. Zepernick.    Each year, the JGI solicits novel research projects from PIs who have not led any previously accepted … for this ongoing call; the next deadline for proposal submission is Sept. 8, 2026, for inclusion in the October …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… really fully exist back then,” said Hal Alper, a University of Texas at Austin professor, “but we really first heard … or through the  “Facilities Integrating Collaborations for User Science” (FICUS) initiative .  Q: What is the … of the proposals. Upon approval from JGI reviewers, the DOE project managers review the proposals. The proposer of …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
… analyzing the enzymes present in the complex organic matrix of the forest floor, a team of researchers have found that … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … sequences assembled as part of its 1000 Fungal Genomes Project . To map microbial activity, Baldrian’s team …
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A Model System for Perennial Grasses
… Panicum hallii genomes offer insights to drought tolerance. The Science Researchers … The U.S. Department of Energy (DOE) supports research programs for developing methods for converting plant biomass … DOE Joint Genome Institute (JGI), a DOE Office of Science User Facility, report the culmination of nearly a decade of …
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Applying Viral Genomics Expertise to Understanding the Human Virome
… viruses outnumber the microbes by at least another order of magnitude. For years, scientists at the DOE Joint Genome Institute, a DOE Office of Science user facility located at Lawrence Berkeley National … Laboratory, have collaborated with global researchers on projects related to understanding how the interactions …
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Micro-Scale Applications Group
… Micro-Scale Applications group explores the genetic makeup of natural microbial communities using a variety of cutting-edge approaches.  Our group also seeks out new approaches that utilize microfluidics/microdroplet technology in order to enhance the … The JGI uniquely offers the first quantitative Stable Isotope Probing (SIP) …
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2022 Progress Report
… Pictured is a timelapse of the Integrative Genomics Building (IGB) seen above is … (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility at Lawrence Berkeley National Laboratory … Lab), is to become the leading integrative genome science user facility enabling researchers to solve the world’s …
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JGI@25: Cow Rumen and the Early Days of Metagenomics
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … cost and resource requirements of processing these sturdy materials, rumen microbes and their enzymes are an optimal … and then extrapolating data obtained from environmental samples — to identify over 27,000 microbial genes. These …
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JGI@25: Mapping Switchgrass Traits with Common Gardens
… In honor of the JGI's 25th anniversary in 2022, we have revisited a … could then be converted into sustainable biofuels . For its importance to the DOE mission, switchgrass is among the JGI … have also harnessed the switchgrass gardens for other projects. At the 2021 JGI Annual Meeting, David Lowry talked …
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New Research Finds Flagella in the Terrestrial Roots of Marine Bacteria
… Ancient  Chloroflexota s ditched their flagella and other traits when … place: hot spring-dwelling bacteria from the phylum C hloroflexota . Research shows that flagella were lost in other … of Energy Joint Genome Institute, a DOE Office of Science User Facility at Lawrence Berkeley National Laboratory, has …
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