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Deciphering the evolution of flavin-dependent monooxygenase stereoselectivity using ancestral sequence reconstruction
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Fast and accurate identification of plasmids and viruses in sequencing data using geNomad
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Expanding Virophage Diversity
… of Energy Joint Genome Institute, a DOE Office of Science User Facility  located at Lawrence Berkeley National …
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2025 Progress Report
… how their laboratory and data science efforts support users, advance foundational science and enable biotechnology … Mission  As a U.S. Department of Energy Office of Science user facility supported by the Biological and Environmental …
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Toward More Reproducible, Reusable Stable Isotope Probing Experiments
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … new ways of harnessing large datasets, JGI researchers and users are looking for ways of making these experiments more … and Reusability) for data reuse.  In the last year, JGI’s user community has helped propel multiple efforts along …
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Genome Insider
… episode, host Menaka Wilhelm interviews researchers — JGI Users — and dives into their work on all kinds of organisms, …
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Triggering Morel Fruiting
… (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility,  reported on just how morel fruiting is … every family of fungi. In the following guest piece, JGI user Dr. Tan details the results of the team’s work. Morels … by the black morel, as well as the gene-expression programs encoding the biochemical processes unveiled by …
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A One-Stop Shop for Analyzing Algal Genomes
… genomic data on algae into one place, PhycoCosm allows users to easily compile data that answers what genes are … (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … the chloroplast. In the cases where data are available, a user can also analyze gene expression from published …
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Niche dimensions of a marine bacterium are identified using invasion studies in coastal seawater
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High‐Density Single Nucleotide Polymorphism Linkage Maps of Lowland Switchgrass using Genotyping‐by‐Sequencing
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Obtaining genomes from uncultivated environmental microorganisms using FACS–based single-cell genomics
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Linking soil biology and chemistry in biological soil crust using isolate exometabolomics
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