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Fishing for Novel Cellulose Degraders
A “bait and hook” single-cell genomic approach to bioprospecting. The Science One of the most vital pieces … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at … the researchers also hooked and were able to reconstruct a high-quality draft co-assembled genome for a new genus …
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Bacteria and Fungi Divvy Up the Work in Forest Floor
Bacterial enzymes play second fiddle to those from fungi when it comes to breaking down tough … Science Walk in a temperate forest filled with Norway spruce trees, and microbial activity teems beneath your feet. … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in … matching these viral genetic sequences to their hosts is crucial to understanding what these viruses can do. Building … prediction approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely …
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A Collaboration to Improve Plant Genome Annotations Across Species
To provide broad plant genomic capabilities, the DOE Joint … improvement for plants. As part of that partnership, the JGI and HudsonAlpha researchers led a team that  recently … to standardize the experimental protocols. Then, in 2020, seven more groups joined the project to contribute to …
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Assessment of the Deepwater Horizon oil spill impact on Gulf coast microbial communities
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The Surprising Structure of a Shrub Willow Sex Chromosome
… strategy we are far more familiar with: differentiating into male and female sexes. For the first time, the sex … sequenced with sufficient resolution to analyze their structure. Scientists found both a gene likely important for … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Tracking the Origins of Methane-Producing Microbes
Identify Novel Archaeal Methane Metabolism. Methane-producing archaea are estimated to produce 500 million tons of methane a year, which is over … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, report the …
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JGI-Enabled Research Demonstrates the Existence of New Methane-Makers
… gas, regulate Earth’s climate. Most methane is produced in environments without oxygen through a process called … of significant interest for their potential contributions to a sustainable bioeconomy, including, potentially, methane … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Refining the Process of Identifying Algae Biotechnology Candidates
… [subhed -- copy to summary above^ as well ] The Science The recipe for … grow, and then harvest for use as biofuels and other bioproducts. As any good cook knows, recipes can be refined for … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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The More the Merrier: Making the Case for Plant Pan-genomes
… abide by the concept, “the more the merrier,” with respect to their genomes. In their base state, they are diploids … plants multiply. Over time, plants lose many genes after such events, returning their genomes to a diploid state while … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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Meeting report: International soil virus conference 2024
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Ben Bowen
State University, Tempe, Chemical Engineering Post-doctoral positions – Arizona State University, Bioengineering & … Lab Director’s Award for Exceptional Achievement 2012 UC Berkeley, Leadership and Development Program Awardee 2005-2009: NIH K25 Mentored Career …
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