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Interdisciplinary delegation from the University of Duisburg-Essen explores collaborative opportunities with Lawrence Berkeley National Laboratory
… kick-off meeting held at Lawrence Berkeley National Laboratory (Berkeley Lab) marked the visit of an esteemed … intensifying collaborations in the fields of genomics, structural biology, bioimaging, and water research. The meeting … One Health Ruhr (OHR), and the DOE Joint Genome Institute (JGI), Molecular Biophysics and Integrated Bioimaging (MBIB) …
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Frederik Schulz
… Dr. Schulz employs multi-omics (metagenomics, metatranscriptomics, single cell genomics and phylogenomics) and machine … to find novel functions that may impact microbiome structure and biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the …
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Uncovering Novel Genomes from Earth’s Microbiomes
… Large-scale comparative analysis leads to identification of biosynthetic gene clusters for novel … archaea by 44%, is now available and  described November 9, 2020 in  Nature Biotechnology . Known as the GEM (Genomes … the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at …
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iPHoP: A Matchmaker for Phages and their Hosts
…   To understand virus-host dynamics, computation helps fill in … matching these viral genetic sequences to their hosts is crucial to understanding what these viruses can do. Building … prediction approaches, researchers have created a new program called iPHoP (pronounced “eye-pop”,  freely …
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Cracking the Secrets of the Diatom’s Shell
… Diatoms, a group of tiny algae, are also known as “living … of their silica shells. But what genes are responsible for such mesmerizing exteriors? Setsuko Wakao and Kris Niyogi, biologists at both UC Berkeley and Lawrence Berkeley National Laboratory, aim to find out. …
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Mike Sneddon
… and bioinformatics annotation pipelines that support JGI’s portals, tools, and the DOE’s emerging AI-enabled capabilities for … clinical cancer diagnostics company, where he led the Production Informatics team in delivering validated … 566–569 (2018). Sneddon, MW, Pontius, W, and Emonet, T. Stochastic coordination of multiple actuators reduces latency …
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Informatics Advisory Committee
… The IAC is chartered by the JGI Chief Informatics Officer (CIO) and reports to the JGI Director. The IAC is chartered to render advice, guidance, and …
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John Vogel
… Dr. Vogel joined JGI in 2014 to establish a plant functional genomics … in an effort to create improved varieties for biomass production. He did his postdoctoral studies at the Carnegie … distachyon is a small annual grass that is well suited to experimental manipulation in the laboratory because of …
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How Maize Makes An Antibiotic Cocktail
… Maize produces a family of compounds that protects it against … at least 15 zealexins, they suspect there are even more to find. Zealexins are produced in every corn variety and … as  Sorghum bicolor — a  candidate bioenergy feedstock and  JGI Flagship Plant — could produce at least 15 zealexins. …
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Building Sphagnum Genomic Resources
… carbon cycling impact.   The Science Enabled by the JGI’s Community Science Program (CSP), researchers are developing a number of resources to build up Sphagnum as a plant model system focused on … reason, the U.S. Department of Energy is overseeing the SPRUCE (Spruce and Peatland Responses Under Changing …
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JGIota: The Algae Nicknamed ‘Chlamy’
… alga – Chlamydomonas reinhardtii – that’s managed to have a big impact. UC Berkeley plant biologist Sabeeha Merchant explains why she works on this alga, how researchers managed to sequence its genome, and what it has to teach us about …
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Engagement Webinar: What Can You Do With An Approved CSP Functional Genomics Call Proposal?
… On July 8, JGI’s DNA Synthesis Science group held a  JGI Engagement: … Genomics Capabilities Webinar inviting researchers to submit white papers to the Community Science Program’s  … and development and its applications. “I moved to UC Davis in 2014,” recalled Philipp Zerbe of the University …
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