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Bacteria and Fungi Divvy Up the Work in Forest Floor
… to identify proteins, the team compiled DNA sequences (metagenomes) and messenger RNA sequences (transcriptomes) from … suggest that fungi are breaking down plant fibers, like cellulose and lignin. Bacteria, on the other hand, appear to … of Science National User Facility , with the stroke of a single proposal. … This work was supported by the Czech …
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Tracking the Origins of Methane-Producing Microbes
Biohub, and the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user … these samples by sorting the microbes into small pools of cells that were then sequenced separately. From these … more with JGI Microbial Program head Tanja Woyke and her Single Cells team member Frederik Schulz to screen the …
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Exploring Polymorphisms Created by Transposable Elements
My project at the Joint Genome Institute (JGI) was to measure the polymorphisms that …
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The Case for Conservation
How sex chromosomes “older than dinosaurs” could help improve crop yields.  The Science The … moss Ceratodon purpureus is a short plant with a complex genome . Now, high-quality reference genome sequences of the male and female plants, each representing a single set of chromosomes, are available. The genome …
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The endosymbiotic box of protective tricks
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Adopt-A-Genome
In this episode, undergraduates adopt genomes that the JGI … (California State San Marcos) about how the Adopt-A-Genome project got started. Plus, Kalyani Maitra (California State …
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An Age of CRAGE: Advances in Rapidly Engineering Non-model Bacteria
… that allows researchers to quickly modify diverse bacterial genomes. In 2019, the JGI’s Yasuo Yoshikuni and his team  … scientists to insert large pieces of DNA (up to 60 kb) in a single step, directly into the genome. “CRAGE is central to … the amount of DNA that can be inserted at a time. In a  project detailed in  ACS Synthetic Biology , Yoshikuni and …
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What Happens Underground Influences Global Nutrient Cycles
EMSL and JGI announce FY 2020 collaborative FICUS projects. Through the Facilities Integrating Collaborations for User Science (FICUS) program, … Molecular Sciences Laboratory (EMSL) and the  DOE Joint Genome Institute (JGI)—have selected 11 proposals for …
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Nigel Mouncey
Dr. Mouncey joined the DOE Joint Genome Institute in 2017 as the fourth … include strategic planning and ensuring program excellence. The Director represents the JGI to its various …
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Scaling Up Existing Skill Sets
… anyone in the Institute to get feedback and insights on the project and everyone’s willingness to guide or mentor me … Year: 3rd year undergraduate student Mentor: Zhong Wang, Genome Analysis What effect has your summer internship with … in my project was worth it whenever I was able to get a single line of code working and get the desired final …
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An Automated Tool for Assessing Virus Data Quality
… fragments and data quality. The Science Through advances in sequencing technologies and computational approaches, … recovered and identified from environmental samples (metagenomes). However, the quality and completeness of … who encounter an elephant for the first time. Based on the single body part each blind man touches – a tusk, the ear, …
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Crysten Blaby-Haas
Blaby-Haas joined the JGI in 2022 as lead of the Biomolecular Materials … at Berkeley lab. She earned her PhD in Microbiology and Cell Science in 2011 from the University of Florida, working … user capability between the JGI and Molecular Foundry for genome-encoded biomaterial discovery, design, and …
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