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Engagement Webinar: Accessing NEON’s Environmental Sample Archives, Applying JGI & EMSL Omics Tools
… National Ecological Observatory Network (NEON) is a network of field research sites designed to collect long-term open … Through the  “Facilities Integrating Collaborations for User Science” (FICUS) call between the JGI and the  Environmental … at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to …
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JGIota: Looking Back at How Cow Rumen Samples Landed on a Syllabus
… JGI-supported researchers published a paper in the journal Science . It detailed how they’d used metagenomics to … University campuses for biotechnology education as part of a course-based undergraduate resource experience. Hear … Professor Matthias Hess, also the chair of the JGI User Executive Committee, on how that study went from the …
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JGI Early Career Researchers Featured in mSystems Special Issue
… In a special issue of mSystems , out May 14, 2019, JGI researchers are among … National Laboratory (Berkeley Lab). JGI is a DOE Office of Science user facility at Berkeley Lab.   … at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to …
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A Plant Root Atlas for Tracking Developmental Trajectories
… A collaborative team led by Geoffrey Schiebinger at the University of British Columbia, … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to …
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Supercomputing, MetaHipMer and the Mega Dataset of Lake Mendota
… before. In 2006, the JGI produced 33 billion base pairs of sequence; by 2023, that number was almost 717 trillion. … this “ data tsunami ,” as Kathy Yelick of the Computing Sciences Area at Lawrence Berkeley National Laboratory … computing infrastructure and analysis. This way, JGI users — both primary, data-generating users, as well as …
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Plant Microbial Interactions Group
… are complex organisms that harbor a fantastic diversity of cell types and associated organisms, including fungal and … and are influenced by microbial partners. We use a variety of genomics-powered tools to study this complexity, … fungi, viruses. Resident viruses can be found in a myriad of bacterial strains, whereby they can modulate host …
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Ray Turner Completes Last Tour of Lab Duty at JGI
… as a typical monthly JGI All-Hands Meeting, after a couple of perfunctory items, the agenda went off the rails – … Michael Brandt (Operations Deputy), Horst Simon (Science Deputy), Jeff Blair (Chief Laboratory Counsel) and … Officer). “You define the word ‘collegial’” “Every user facility at this Laboratory needs to have a great …
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Characterizing Communities: JGI Announces Latest CSP Portfolio
… to Africa to global oceans. Through the Community Science Program of the U.S. Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science user facility, 24 large-scale proposals have been accepted … at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to …
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Comparative Genomics Using the Integrated Microbial Genomes and Microbiomes (IMG/M) System: A Deinococcus Use Case
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Boosting Small Molecule Production in Super “Soup”
… still work in cell-free environments? (Spoiler: Yes.) Think of cells as tiny factories: within their walls they have … Energy (DOE) Joint Genome Institute (JGI), a DOE Office of Science User Facility located at Lawrence Berkeley National … at Lawrence Berkeley National Laboratory, is committed to advancing genomics in support of DOE missions related to …
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Frederik Schulz
… Genome Institute in 2016 and is leading the New Lineages of Life Group. His research is focussed on the discovery of novel bacterial, archaeal and eukaryotic microbes and … biogeochemical cycles. He provides his expertise to the JGI user community and supports various user projects in the …
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Jeremy Schmutz
… human chromosomes 5, 16, and 19. Following the completion of the Human Genome Project in 2003, he developed … assembly, and improvement strategies for de novo sequencing of eukaryotic organisms from simple yeasts to large … Program, focusing on the organization of community driven science for JGI Plant Flagship Genomes and DOE relevant …
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