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SPRUCE-ing Up Science
… his backyard in Tennessee — the birds are chirping and a soft breeze ripples through the trees in his backyard. … Wang. Together, they worked to develop a tool that leveraged machine learning to help users determine which computer … mediate Sphagnum peatmoss resilience to warming . New Phytol. 2022 Jun;234(6):2111-2125. doi: …
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Improving the Cacao Genome and Phytozome
… fungal infections. That’s why Mars, Inc., a maker of chocolate for more than 100 years and one of the world’s largest buyers of cocoa, is collaborating with others to develop healthier … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Architecture of thermal adaptation in an Exiguobacterium sibiricum strain isolated from 3 million year old permafrost: A genome and transcriptome approach
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Celebrating a Decade of Science through the JGI-UC Merced Genomics Internship Program
… 2023 marked a decade since the inception of the flagship internship program between the DOE Joint … group at Oak Ridge National Laboratory, he has started a new position as the Senior Manager, Machine Learning at Pilot Flying J. Nathaniel Brown …
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The leucine-rich repeats in allelic barley MLA immune receptors define specificity towards sequence-unrelated powdery mildew avirulence effectors with a predicted common RNase-like fold
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A Better Way to Find RNA Virus Needles in the Proverbial Database Haystacks
… to sift and characterize RNA virus sequences.  A zoo once offered a coloring book featuring polar bears in winter … may be akin to finding a single snowflake on a colored-in page of that book. Published online September 28, 2022, in … higher-level classifications of virus groups (phyla.) The new sequences are filling in some gaps on existing virus …
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Webinar: SIP technologies at EMSL and JGI
… Joint Genome Institute (JGI) provide access to a variety of tools that leverage stable isotopes to measure carbon and nutrient flux, and … 1. Q(uestion): How much DNA is required for the JGI SIP metagenomics pipeline? A(nswer):  The more the better. We want … The U.S. Department of Energy Joint Genome Institute, a DOE Office of Science …
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Sequencing Sphagnum Leads to Discovery of Sex Chromosomes
… A nuanced understanding of peat moss drives insight into carbon storage   The Science Boggy peatlands, which hold much of the … to energy, are made up heavily of sphagnum mosses.  New research identifies sex chromosomes in the plant and … (A.J.S.) conducted by the US Department of Energy (DOE) Joint Genome Institute ( …
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Engagement Webinar: How to Successfully Apply for a CSP Proposal
… On September 1, JGI held a JGI Engagement: Pro Tips for Successful Community Science Program … inviting researchers to submit white papers to the CSP  New Investigator call for proposals.  Tips: Contact us with … and relevance to the DOE’s mission.  Have someone proofread your proposal to make sure the goals, experimental …
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Cold adaptive traits revealed by comparative genomic analysis of the eurypsychrophile Rhodococcus sp. JG3 isolated from high elevation McMurdo Dry Valley permafrost, Antarctica
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Identifying the Microbial Cleanup Crew at a Superfund Site
… effort. The Science In 1999, the Environmental Protection Agency declared the North Railroad Avenue Plume (NRAP) a … PCE (perchloroethylene) found its way into the groundwater of several communities in New Mexico via leakage from a local dry-cleaner. … ) conducted by the U.S. Department of Energy Joint Genome Institute (JGI) ( …
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Expanding Virophage Diversity
… Virophages are small viruses with double-stranded DNA genomes that … in  Microbiome , researchers from the US Department of Energy (DOE) Joint Genome Institute (JGI), a DOE Office … of 328 “high quality” (based on completeness) diverse new virophage genomes containing all four core genes. These …
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